Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0001 ATGGCTTTAGAGCAGGAATTATCGCTGGGTCAGAATACGAATCCGAACAGAGTAGACGGAAACACAAACGGCGTGGATGGTCGGGGGGAGGGTGGAGATGAGGGAGGGAAAGCGCCGAGACTGCCTCGTTGGACAAGACAGGAAATTCTGGTTCTGATACAGGGAAAGAGAGACGCAGAGAACAAGTTTAGGAGGGGTCGCACAGCGGGATTGCCATTCGGGTCGGGTCAGGTGGAGCCAAAGTGGGCATCGGTATCTTCCTACTGCAGAAAGCATGGAGTGAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAAGAATGGGAGTCTCAGATAAGGGAGGAGACGGAATCGTTTTGGGTCATGAGAAACGATTTAAGGAGAGAGAGGAAATTGCCCGGATTTTTCGACAAGGAGGTCTATGATATTCTCGATTCAGGCTCGCAGGCGCCGGCGTTGGCTCTCGCTCTTTCGTCGCCTCCACCAACCACAGTAACGGTGCCGGTGGGCAAGGACAAGGACAAGGACACCAAAAGAGTGCCTGACCCTGACGAAGCTGCTGAGCCTGAGGAGCCTCACCTCTATGATAGTAATCGGAGCGCGGCTGGTGAGGATGGCTTGTTCTCAGATTTTGAACAAGATGAAGTGCCTGCCAGTCCTGAGAAGAAGGACGTTTTGCCGCCTTCCAACAAGGACATTCCTGCTCCCATTCCTATCTCAGGTGTGACTAACGAGAAACAGTCTACTTCAAATCCAGAAATGGGTTCTACATCTCAAGGAGAGCGGAAAAGGAAGCGGTTGGCAACTGATGGAGAGGAGGAAACTTTGCAATATCAATTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAGAATATAAATTTCCAGTTGGATCGTGAGCAGCGGAAAGACCATGCAAGTAATTTGGTTGCTGTGCTTGATAAGCTTGCAGATGCTCTAGGGAGAATCGCTGATAAATTATAG 1035 0.4995 MALEQELSLGQNTNPNRVDGNTNGVDGRGEGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPFGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVMRNDLRRERKLPGFFDKEVYDILDSGSQAPALALALSSPPPTTVTVPVGKDKDKDTKRVPDPDEAAEPEEPHLYDSNRSAAGEDGLFSDFEQDEVPASPEKKDVLPPSNKDIPAPIPISGVTNEKQSTSNPEMGSTSQGERKRKRLATDGEEETLQYQLIDVLERNGKMLSAQLEAQNINFQLDREQRKDHASNLVAVLDKLADALGRIADKL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0001 344 MobiDBLite consensus disorder prediction 251 267 - -
Ssu7g0001 344 Pfam Myb/SANT-like DNA-binding domain 43 132 IPR044822 -
Ssu7g0001 344 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 19 344 - -
Ssu7g0001 344 MobiDBLite consensus disorder prediction 1 41 - -
Ssu7g0001 344 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 19 344 - -
Ssu7g0001 344 MobiDBLite consensus disorder prediction 179 208 - -
Ssu7g0001 344 MobiDBLite consensus disorder prediction 164 281 - -
Ssu7g0001 344 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g0001 344 Gene3D - 44 114 - -
Ssu7g0001 344 CDD GT1 42 116 - -
Ssu7g0001 344 ProSiteProfiles Myb-like domain profile. 43 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0001 Ssu-Chr7 20143 24372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0001 27 140 Trihelix Transcription Factor Family AT1G13450 31.897 1.73e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu7g0001 Myb_DNA-bind_4 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0001 - - vra:106771947 530.406