Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3737 ATGGATAACGAGGTGTTAGAATTTGATATTGGGCTGGGAGAAGGCGAGGGAGAATGTGACGATGATGGAGGGGACATTGAACACCCAATTGATGAGGAGGAATTGGCTGatagcagtggtggtggtgctgTAGCCACTGGAGGTGGTGAAATATATCTTCCTGAGGGGGACCTCTTAGATCTTGAACCTTACGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCCTTCTACAATTCCTATGCCCGTCGTGTTGGGTTTAGTACTCGTGTCAGTTCATCCCGTCGTTCCAGGCGCGATGGAGCTATTATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTCCGCAACCTGAATGAGAAACGCACCAAGGATAGAGAGATCAAGCGCCCGCGAACAATTACCAGAGTGGGATGTAAAGCGTCTTTGTCTGTCAAAATGCAAGACTCTGGCAAGTGGATCGTCTCTGGGTTTGTTAGAGAACACAATCACGAACTGGTTCCTCCCGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCAGGAGCTGCCAAGACGCTGATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTAATTAAGGAGTATGGTGGGATTAGCAAAGTCGGGTTTACAGAGGTGGACTGTAGGAATTATATGAGGAATAATAGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTGGATTATTTGAGACAAATGCATGCTGAAAACCCTAATTTCTTTTATGCTGTGCAAGGGGATGAGGATCAGTCCATAAACAATGTTTTCTGGGCTGATCCCAGGGCAAGGatgaattatacattttttggtGATACTGTAACCTTTGACACCACATACCGATCTAATAGGTACCGGTTACCATTTGCTCCCTTTACTGGTGTAAACCATCATGGGCAACCTGTTCTCTTTGGTTGTGCTTTCCTAATTAATGAATCGGAAGCATCATTTGTGTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGATGTCCGCCAGTGTCAATAACAACTGATCATGATTCTGTAATTCGGTCAGCCATAATACAAGTCTTCCCTGAGACCCGCCACCGTTTCTGCAAGTGGCACATCTTTAAAAAATGCCAGGAGAAGTTATCTCATATTTTCCTCAAATATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTTGATTGAGGAATTTGAGTCTTGCTGGTCAGCACTTGTAGATAAATATGATCTGAGGGACCATGAATGGCTTCAAGCAATATATTCTGCTTGTAGGCAGTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTGTATGAGAAAGCACTTGAAAGTCGCAATGAGAAAGAAGTGAGAGCAGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTTGGAACACTAACACTCATGGCATCAAAAGCTGATGATGATGGGGAGGTCATTACATATCATGTAGCTAAATTTGGAGAGGACCATAAAGGGtattatgttaaattcaatgtttTGGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTTTGGCAGTCTTTAGAGTTACCAACGTGCTTACTCTCCCATCTCATTATATATTGAAACGTTGGACAAGAAATGCCAAGAGCAATGTAATATTAGAAGAACATTCTTGTAATGTATATACTTACTATTTGGAATCTAACACAGTTAGATATAATACCCTCCGACATGAGGCctttaaatttgttgatgaaGGTGCACGGTCTGCTGAAACTTATGATGTTGCAATGGATGCTTTACAAGAAGCTGCAAAAAGAGTTGCTCAGGCAATGCAAAATGAGGGAAGAATTCCTATCAGTAATGGAAAGGTAAGGAGTCACATGCTGAATGATGAAAGTCATGCTAATTACACAAGTGGATGCCAGGAAGAAAGCTTGAGCCAACATATATCTAAGGATGATATGGATAAGAATATTAGAAAACTTATGAATGAGCTTGAGTGTGCAAATCGGAAGTGTGAAATTTATCGGTCCAATCTGCTTTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTGTCAGTTAAGGTGGAAAACATCAAGATAAGCATGAAAGATGGCATCTAA 2358 0.4075 MDNEVLEFDIGLGEGEGECDDDGGDIEHPIDEEELADSSGGGAVATGGGEIYLPEGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWIVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSINNVFWADPRARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGCPPVSITTDHDSVIRSAIIQVFPETRHRFCKWHIFKKCQEKLSHIFLKYPNFEAEFHKCVNLTELIEEFESCWSALVDKYDLRDHEWLQAIYSACRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTLMASKADDDGEVITYHVAKFGEDHKGYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEEHSCNVYTYYLESNTVRYNTLRHEAFKFVDEGARSAETYDVAMDALQEAAKRVAQAMQNEGRIPISNGKVRSHMLNDESHANYTSGCQEESLSQHISKDDMDKNIRKLMNELECANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGI 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3737 785 Coils Coil 728 755 - -
Ssu6g3737 785 Pfam FAR1 DNA-binding domain 78 169 IPR004330 -
Ssu6g3737 785 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 39 758 - -
Ssu6g3737 785 Pfam SWIM zinc finger 558 604 IPR007527 GO:0008270
Ssu6g3737 785 Coils Coil 669 689 - -
Ssu6g3737 785 Pfam MULE transposase domain 290 383 IPR018289 -
Ssu6g3737 785 ProSiteProfiles Zinc finger SWIM-type profile. 570 606 IPR007527 GO:0008270
Ssu6g3737 785 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 758 IPR031052 GO:0006355
Ssu6g3737 785 SMART 26again6 581 608 IPR006564 GO:0008270
Ssu6g3737 785 MobiDBLite consensus disorder prediction 8 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3737 Ssu-Chr6 81636924 81645564 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu6g3737 MULE 6.1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3737 - - gmx:100793442 1456.81