Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3733 ATGGGCAACACATGCCGTGGATCTTTGAAAGGGAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCACTCCAAGCGCACCACCCATTCTGATCGCTCCGACTCCGAACaccactcaaccaaacaaaatcTCAATTCTGCagaaaacaataacaacaacaacaacggtAATCTACCCTTGAACTCCAAGAAAGACACCATCATGCGCCGAGGCCTCGACAACCAAGCATATTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGGAAATTGGGACAGGGACAATTTGGCACCACTTATTTATGCACTGAGAATTCTACCTCCATTGAATATGCATGCAAATCCATCTCCAAAAGGAAGTTGATTTCCAAGGAGGACGTGGAGGATGTTAGGAGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAAGAACATTGTCACCATCAAGGGTGCTTATGAGGATCCACTTTATGTTCATATTGTCATGGAGCTTTGTTCTGGGGGTGAGTTGTTTGATCGCATTATCCAGAGGGGCCACTATACCGAGAGGAAGGCTGCAGACTTGACCAAAATTATAGTTGGGGTTGTTGAGGCATGCCATTCCCTTGGGGTTATGCATAGGGATCTCAAGCCTGAAAACTTTTTGTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCCGTTTTCTTCAAACCCGGTCAAGTTTTCACCGATGTAGTTGGCAGCCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGATGTGTGGACAGCAGGTGTCATACTGTACATATTGCTGAGTGGCGTGCCACCGTTTTGGGCAGAGACCCAGCAGGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGATTCAGATCCTTGGCCTCTAATATCTGACAGTGCAAAAGATCTGATTAGAAAGATGCTGTGTTCTCGGCCTTCAGAACGGTTGACTGCTCATCAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCCCCTGACAGGGCACTGGACCCTGCTGTTCTTTCTCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCTTTGCGGgtAATTGCTGAAAGTCTATCCGAAGAGGAGATCGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGGGCAATCACTTTCGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAACAGTGGAACCATAGATTATGGGGAGTTTATTGCTGCAACAGTTCATCTCAACAAACTAGAGCGTGAAGAACATCTCATTGCAGCATTCCAATATTTTGACAAGGATGGTAGTGGTTATATTACAGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGTTTTTCTTGAAGATATTATTAGGGAGGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCCATGATGCAAAAAGGCAATCCTGGAATTGGTAGGAGGACTATGCGCAACAGTCTGAATTTAAGCATGAGAGATGCACCAAGTGCTCAATAG 1665 0.4264 MGNTCRGSLKGKYIQGFSQPEDHSKRTTHSDRSDSEHHSTKQNLNSAENNNNNNNGNLPLNSKKDTIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSIEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAADLTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSAKDLIRKMLCSRPSERLTAHQVLCHPWICENGVAPDRALDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDVFLEDIIREVDQDNDGRIDYGEFAAMMQKGNPGIGRRTMRNSLNLSMRDAPSAQ 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3733 554 SUPERFAMILY Protein kinase-like (PK-like) 70 373 IPR011009 -
Ssu6g3733 554 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Ssu6g3733 554 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 4 44 539 - -
Ssu6g3733 554 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3733 554 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Ssu6g3733 554 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Ssu6g3733 554 Gene3D Transferase(Phosphotransferase) domain 1 177 358 - -
Ssu6g3733 554 ProSiteProfiles EF-hand calcium-binding domain profile. 392 427 IPR002048 GO:0005509
Ssu6g3733 554 CDD STKc_CAMK 91 348 - -
Ssu6g3733 554 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3733 554 Gene3D - 359 530 - -
Ssu6g3733 554 ProSiteProfiles EF-hand calcium-binding domain profile. 503 533 IPR002048 GO:0005509
Ssu6g3733 554 MobiDBLite consensus disorder prediction 1 63 - -
Ssu6g3733 554 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Ssu6g3733 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 44 539 - -
Ssu6g3733 554 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Ssu6g3733 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Ssu6g3733 554 SUPERFAMILY EF-hand 373 530 IPR011992 -
Ssu6g3733 554 MobiDBLite consensus disorder prediction 42 62 - -
Ssu6g3733 554 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Ssu6g3733 554 Pfam EF-hand domain pair 467 528 IPR002048 GO:0005509
Ssu6g3733 554 Pfam EF-hand domain pair 397 457 IPR002048 GO:0005509
Ssu6g3733 554 SMART efh_1 396 424 IPR002048 GO:0005509
Ssu6g3733 554 SMART efh_1 432 460 IPR002048 GO:0005509
Ssu6g3733 554 SMART efh_1 502 530 IPR002048 GO:0005509
Ssu6g3733 554 SMART efh_1 468 496 IPR002048 GO:0005509
Ssu6g3733 554 ProSitePatterns Protein kinases ATP-binding region signature. 97 120 IPR017441 GO:0005524
Ssu6g3733 554 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Ssu6g3733 554 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3733 554 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3733 Ssu-Chr6 81552672 81560612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3733 1 550 EF-hand Containing Proteins AT2G17290 84.381 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g3733 Pkinase 5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3733 K13412 - gmx:100778173 1038.48