Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3727 atgCAGCTTGCTTATCATAGGTTCTGGATGAATCTGCTATGCCTTACATTAACGTTGATCCTATTGCATGGAGCATCAAGAGTTGGAGCTTCCAGACATGATGATGTCGTCAAAATCGGTGCCATATTcacattaaaaactataaacgGACGAGTTTCCAAAATTGCCATCCAAGCTGCTGAGAAAGATGTGAATTCCGATCCTCGCATCCTGGGGGGACGTAAATTGTCCATAACTATCCATGATTCCAACTTCAGTGGTTTTCTTAGCTTTATTGGGGCCCTCAAGTTCTTGATGACCGACACAGTAGCTATAATTGGTCCACAAAATTCAGTAATGGCCCATGTGCTTTCGCATCTTGCAAATGAGCTCCATGTTCCCCTACTGTCCTTCACGGCTCTGGATCCCACCCTAACACCTCTCCAGTATCCTTATTTTGTCCAAACAGCACCCAGCGATGAGTTCCAGATGTCTGCAGTTGCGGACATGATTAGTTattttggttggagagaagtcATAGCAGTATTCAGTGATGACGATCAGAGTCGAAACGGGATAACTGTATTGGGGGATAAACTTGCAGAGAGACGCTGCAAGTTATCTTACAAAGCAGCACTGCCCCCTGATCCAACCGCCACTCCAAGTGATGTTACTACTCAGTTAGTGAAGATTACGAGTATGGAAGCTCGAGTAATCGTTTTACACACCTTCGCACAAACAGGTCTCTTGGTTTTTGACGTGGCTCAAAAACTAGGAATGATGACCAAAGGGTATGTCTGGATAGCTACTGCTTGGTTATCAACAGTTTTAGATTCAACTTCTGCTTCAAATACTTCTAACTCAATGCAAGGAGTTCTTACCTTTTGCCCTCACACCCCTCAATCCAGAAGAAAACAGTCATTTATCTCAAGGTGGAAACACTTAAGTAATGGTTCAATTGGGTTAAATCCATACGGACTCTATGCATATGATTCTGTTTGGATGATTGCTCAGgcactaaaattattttttgatcaGAATGGTACCATTTCATTCtctaataatacaaatttaagtGGTATGAAGGAAGAGACTCTGGATCTTGGTGCTTTGAGCGTCTTTGATGGAGGGAAACAGTTACTTGATAACATATTGCGCATTAATATGACTGGATTGACTGGACCTATTCAATTTGGTCCAGATAGGTCTCCTCTACATCCATCATATGACATCCTTAATGTAATTGCTACAGGTTATAGGAGAATCGGTTTCTGGTCTAATTACTCGGGGCTCTCTGTAATAACCCCTGAGAAACTTCACGCAAAGCCTGCCAATCGTTCAATTTCAAGCCAGCATCTAAACCGTGTCATATGGCCTGGAAATACAACAGAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCAACTGAGAATTGGAGTTCCCAACAGAGTTAGTTATCGAGACATGGTCTCACAAGTAAATGGCACCAATCAAGTTCAAGGATATTGCATAGATATATTCCTAGCCGCCATAAAATTGCTTCCATATGCAGTTCAATATAAGTTCGTTCTGTATGGAGATGGACACAAGAACCCAAGCTACTATGATCTTGTCAACATGATTCATTCTGATGTTTTTGATGCTGCTGTAGGTGACATTGCTATTGTCACTGGCCGAACAAAGATTGTGGATTTTACACAACCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCcagtaaaaaaattgaagtcaaaTGCTTGGGCTTTCTTGCGACCATTTACTCCACTGATGTGGGGTGTCactgcattttttttccttcttgttgGAGCAGTGGTGTGGATTCTTGAACATAGAACTAACGATGAGTTTCGGGGACCGCCAAAGGAACAGATAGTTACAGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTTAGTCCACTTGGTCGAGTTGTGTTGCTAATCTGGCTTTTTGTGGTTCTGATAATCACTTCAAGCTACACTGCAAGCTTGACATCAATTTTCACTGTGCAGCAGCTGTCCTCACCCATAACAGGAATTGACAGCTTGATATCCAGCAGTGAACGAATAGGGTACCAAGTAGGCTCATTTGCGGCAAACTATCTGACTGAGGAACTCAACATCCCAAAACATAGACTTGTTCCTCTTGGCTCACCAGAAGAATATGCTGTTGCCCTTGAAAGAGGAACTGTTGCAGCTGTGGTGGATGAACGACCGTATGTAGAACTCTTCCTTTCAGACCACTGCAAATTCTCAATTAGGGGTCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCCGAGGGGCTCTCCTTTAGCAATTGATATGTCAACAGCCATTCTAACTCTATCAGAGAATGGTGAACTTCAGAGGATCCTTGAAAAGTGGCTTTCAGAAAAGGCTTGTGGTTTTCACAGTACTGAGGATGAGCAGCTTCAATTAAATAGCTTCCGGGGCCTGTTTCTAATCTGTGGGATAGCATGTTTCCTGGCTCTTTTTATCTACTTTTCTTCAGTGGTACACCAATTCAGTAAAAAATCCCCTCAAAAAGCTGGTCCTTCTAATCGTTGCCGCTCACGTTCCGCACGCATCCAgacatttctaaattttgttgaCGAAAAAGAAGACGTATCACCCaagaagttaaaaagaaaactcGAGTATATTTCATCTAATGCTTATACCACAGAAAATCGTTTGAGGAGCATATCCACGAGAGTACAAGTGGACCTTTCTCAAGAGGCTCCTAGTGGTTAA 2787 0.4065 MQLAYHRFWMNLLCLTLTLILLHGASRVGASRHDDVVKIGAIFTLKTINGRVSKIAIQAAEKDVNSDPRILGGRKLSITIHDSNFSGFLSFIGALKFLMTDTVAIIGPQNSVMAHVLSHLANELHVPLLSFTALDPTLTPLQYPYFVQTAPSDEFQMSAVADMISYFGWREVIAVFSDDDQSRNGITVLGDKLAERRCKLSYKAALPPDPTATPSDVTTQLVKITSMEARVIVLHTFAQTGLLVFDVAQKLGMMTKGYVWIATAWLSTVLDSTSASNTSNSMQGVLTFCPHTPQSRRKQSFISRWKHLSNGSIGLNPYGLYAYDSVWMIAQALKLFFDQNGTISFSNNTNLSGMKEETLDLGALSVFDGGKQLLDNILRINMTGLTGPIQFGPDRSPLHPSYDILNVIATGYRRIGFWSNYSGLSVITPEKLHAKPANRSISSQHLNRVIWPGNTTEKPRGWVFPNNGRQLRIGVPNRVSYRDMVSQVNGTNQVQGYCIDIFLAAIKLLPYAVQYKFVLYGDGHKNPSYYDLVNMIHSDVFDAAVGDIAIVTGRTKIVDFTQPYIESGLVVVAPVKKLKSNAWAFLRPFTPLMWGVTAFFFLLVGAVVWILEHRTNDEFRGPPKEQIVTVLWFSFSTMFFAHRENTVSPLGRVVLLIWLFVVLIITSSYTASLTSIFTVQQLSSPITGIDSLISSSERIGYQVGSFAANYLTEELNIPKHRLVPLGSPEEYAVALERGTVAAVVDERPYVELFLSDHCKFSIRGQEFTKSGWGFAFPRGSPLAIDMSTAILTLSENGELQRILEKWLSEKACGFHSTEDEQLQLNSFRGLFLICGIACFLALFIYFSSVVHQFSKKSPQKAGPSNRCRSRSARIQTFLNFVDEKEDVSPKKLKRKLEYISSNAYTTENRLRSISTRVQVDLSQEAPSG 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3727 928 Gene3D - 457 581 - -
Ssu6g3727 928 CDD GluR_Plant 469 807 - -
Ssu6g3727 928 Gene3D - 740 814 - -
Ssu6g3727 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 921 - -
Ssu6g3727 928 SUPERFAMILY Periplasmic binding protein-like I 31 463 IPR028082 -
Ssu6g3727 928 SMART AABind_6 470 810 IPR001638 -
Ssu6g3727 928 SMART GluR_14 472 809 IPR001320 GO:0015276|GO:0016020
Ssu6g3727 928 Gene3D - 152 424 - -
Ssu6g3727 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 144 163 - -
Ssu6g3727 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 658 680 - -
Ssu6g3727 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 50 66 - -
Ssu6g3727 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Ssu6g3727 928 Pfam Bacterial extracellular solute-binding proteins, family 3 488 808 IPR001638 -
Ssu6g3727 928 Gene3D - 55 399 - -
Ssu6g3727 928 Pfam Ligand-gated ion channel 809 838 IPR001320 GO:0015276|GO:0016020
Ssu6g3727 928 PIRSF IGluLR_plant 6 926 IPR017103 -
Ssu6g3727 928 Pfam Receptor family ligand binding region 55 407 IPR001828 -
Ssu6g3727 928 CDD PBP1_GABAb_receptor_plant 38 426 IPR044440 -
Ssu6g3727 928 Gene3D - 582 716 - -
Ssu6g3727 928 PANTHER GLUTAMATE RECEPTOR 3.6 23 921 - -
Ssu6g3727 928 SUPERFAMILY Periplasmic binding protein-like II 449 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3727 Ssu-Chr6 81479545 81483198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3727 12 895 Ion Channels AT2G17260 62.319 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3727 K05387 - gmx:100793969 1396.72