Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3725 ATGGGAATTTGCTGGGGTTCTCCACCTCACAACTCAACCCCAACAACTACCGGTAACCTTAGTACAGCTACACCGGAGACATCTCAGACCATCAGCAGCAGctatactactactactactactacttcTGGAAGTGGGAACAGCTCCATAAATAGCAAGTTCTCGGTGTCAAGCGGTGATCAACCTTATCCAAATGGACAGATCTTACCTACCTCTAATTTGAGGATCTTCACTTTTGCGGAGTTGAAGGCTGCAACTAGGAATTTCAGAGCTGATACAGTGCTTGGGGAGGGAGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAGAAGGCCACGTCAAAGAGTGGAACAGTCATAGCCGTCAAAAAATTGAACTCCGAAAGCTTACAAGGACTTGAGGAGTGGCAGTCCGAAGTACATTTTCTAGGACGCCTTTCTCATCCTAATCTTGTTAAGCTGTTGGGATACTGTTTGGAGGAAACAGAGCTACTTCTCGTCTATGAATTCATGCAAAAGGGCAGTTTGGAAAACCATCTATTTGGAAggGGCTCTGCTGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCAGCACGTGGCCTTGCATTCTTGCACACATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATATTGCTTGATGGGTTCTATAACGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCAGCTAGTCAATCCCATGTGACCACTAGGGTGATGGGCACATACGGTTATGCGGCTCCTGAATATGTGGCCACAGGGCATCTGTATGTAAAGAGTGATGTATATGGGTTTGGAGTTGTTTTGGTCGAGATACTAACAGGTCTACGAGCACTTGATAACAACCGTCCAAGTGGGCAACATAATCTAACAGAGTGGGTCAAACCATACCTGGATGACAGAAGAAAATTGAAGAGCATTATGGATTCTCGATTGGAAGGAAAATTTCCATCCAAAGCTGCATTTCGTATAGCTCAGCTTGCTTTGAAATGTATTGCAGCTGAGCCCAAACAGCGGCCATCAATGAAGGAAGTTTTGGAAAATTTGGAGCGAATTCAAGCTGCCAATGAGAAACCTGTGGAGCCTAAATTCCGATCTACTCATGCCCATCAGGGTCACCAGGCGGTGCACCATCGTTCTCCACGTCTGGATAGTAGTTACTAG 1215 0.4453 MGICWGSPPHNSTPTTTGNLSTATPETSQTISSSYTTTTTTTSGSGNSSINSKFSVSSGDQPYPNGQILPTSNLRIFTFAELKAATRNFRADTVLGEGGFGKVFKGWLEEKATSKSGTVIAVKKLNSESLQGLEEWQSEVHFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGFYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDNNRPSGQHNLTEWVKPYLDDRRKLKSIMDSRLEGKFPSKAAFRIAQLALKCIAAEPKQRPSMKEVLENLERIQAANEKPVEPKFRSTHAHQGHQAVHHRSPRLDSSY 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3725 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Ssu6g3725 404 Gene3D Transferase(Phosphotransferase) domain 1 171 391 - -
Ssu6g3725 404 CDD STKc_IRAK 95 369 - -
Ssu6g3725 404 Pfam Protein tyrosine and serine/threonine kinase 92 366 IPR001245 GO:0004672|GO:0006468
Ssu6g3725 404 MobiDBLite consensus disorder prediction 1 58 - -
Ssu6g3725 404 SUPERFAMILY Protein kinase-like (PK-like) 61 366 IPR011009 -
Ssu6g3725 404 PANTHER BNAA09G08980D PROTEIN 14 397 - -
Ssu6g3725 404 PANTHER OS01G0588500 PROTEIN-RELATED 14 397 - -
Ssu6g3725 404 MobiDBLite consensus disorder prediction 371 404 - -
Ssu6g3725 404 MobiDBLite consensus disorder prediction 371 385 - -
Ssu6g3725 404 ProSitePatterns Protein kinases ATP-binding region signature. 95 124 IPR017441 GO:0005524
Ssu6g3725 404 Gene3D Phosphorylase Kinase; domain 1 73 170 - -
Ssu6g3725 404 ProSiteProfiles Protein kinase domain profile. 89 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3725 404 MobiDBLite consensus disorder prediction 8 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3725 Ssu-Chr6 81425540 81428290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3725 59 374 Receptor kinase-like Gene Family AT4G02010 49.375 5.08e-102 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu6g3725 PK_Tyr_Ser-Thr 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3725 - - gmx:100305417 702.975