Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3723 ATGGAATATGGTGCGTTGGTGCAAAATTGTGGGTTTGGGAGCTTGTCGGAGTGTGGTTCAGTTCCAGAAGAAGATTTGATTGAGGAGCTGCTGGTAGAAGGTTGCTGGGTTGAAACGAGTGGTGTTGGGAGCGAGGCACAGTACATGGGAAGTTGTTCAGAGCAGCAAGAAGCGGAGGTGGGGAAGAGATGGTGGATTGGACCTGCAAAGGCTAATCCAGCTGGGCTATCTTCCTCTGTGAAAGAGAGATTAGTGGTTGCTGTGGGTTACTTGAGAGAATACACAAAGAACGCCAATGTTCTGATTCAGATATGGGTTCCTCTACGGAGAGGGCTTGGGCTTGGGCCTGGCCCTGACTACCACAGAAGTCCAGATGTTGCTGCTTTTCCGATGAACATGAACCCAAGCCTAAGCTCCAACGTAAACCTTCGTTTCTTTAGATGCCATGAGTACCCGCGCCTTCCTTATAATGACGTCCCTGGTTCTTTAGCCCTTCCTGTCTTCGAAAGAGGCACTGCCACATGCCTCGGTGTCCTCCAGATTGTAATGCCGCGCTGGGACACCATCAACTATCGCCCACAACTTGACAATAATGTCTGCAATACTTACGAGGTATTTGAGGAGCTGTATGAAGCAGCAGTGAATGAGATGATGGAGGTGTTGACGTGTGTGTGCAAGACGCACAATCTGCCTTTGGCTCTGACATGGGCACCTTGCATCCAACAAGGAAAGTGTAGGTATGGGCATTCAACGGAGAATTATGTGTCGACTGTGGATGGAGCGTGTTTTGTGGGGGATGGGGAGATATTAGGGTTCCAGGAGGCGTGCTCTGAGCATCACCTTTTCCACGGACAAGGAATCGTTGGGACAGCCTTCGCAACAGCGAAGCCGTGTTTTGCGATTGACATAACCTCCTTCACCAAAGCCGAATATCCTATGGCTCACCATGCCAACATGTTTGGCCTGCATGCTGCCGTCGCTATTCCTCTGAGGAGTGTCTACACAGATTTTGTCTTGGAGTTGTTCCTTCCTAAGGACTGCCATGACAGGGAACAGCAGAAGCACTTGCTCAACTCATTATCCGTGCTCCTTCAGCAAGCTTGCCGGAGCTTGCATGTTGTGATGGAGGATGAATTCACGTTACCGCAGGcacacaatattaataatagtaaagaGGGAACCAGCCCAACAGAAGGGAAAGGGGTGTGTGTGTCGTTGGAATACCTGGAAGTGGAAGAGCCGAAAGAGGAGTTCAAAGTGACAACCAACTGGGACAGTACCGCTGCACAGGAGCAGGTGTTTTCAGAATTTGGGGAAGAATCTCACTCTCACACATTTGGTGGCCGCCGTGGCAGAAAGTCAGGCGAGAAGAGACGAACCAAGGCGGAGAAGACTATCAGCTTGCCAGTTCTAAGACAGTACTTTGCAGGTAGCCTAAAAGATGCGGCAAAGAGCATTGGCGtGTGTCCCACAACTCTGAAAAGGATATGCAGACAGCATGGCATCACGAGGTGGCCTTCAAGGAAAATCAAGAAGGTAGGACACTCTTTAAAGAAACTTCAACTTGTGATCGATTCAGTACAGGGTGCCGAGGGTGCAATACAGATCGGCTCATTCTATTCCAGTTTTCCAGAGTTGAGCTCTGGCCCCACTTCTGAATCATCCAAGtccaagaacaacaacaacagtacCAACTCCTTCTATGGCCATGGACATGGTTTAAAATCCCCATCCTCATCCTCTCCTTCCACTGTGGTGAACACTGCAGCACAAAGCCCTGTTCCTCAACATAATTTCAGGGTGAAGGCCACTTTTGCGGATGAAAAAATCCGTTTCAGCTTGCAACCAATATGGGGCTTCACAGATTTGCAGCTGGAGATTGCAAGGCGTTTCAATCTAAACGATGTCACCAACGTGGTTCTCAAGTATTTGGATGATGAAGGAGAGTGGGTAGTTTTAGAGTGCGATGGTGATCTTGAGGAGTGTAAAGACTTGCATACATCGTCCCACAGCCGCACAATTAGACTCGCCCTATTTCAAGCTTCGCCTCTCAATCTACCAAATACTTTTGGCCCTTCGTAA 2082 0.4817 MEYGALVQNCGFGSLSECGSVPEEDLIEELLVEGCWVETSGVGSEAQYMGSCSEQQEAEVGKRWWIGPAKANPAGLSSSVKERLVVAVGYLREYTKNANVLIQIWVPLRRGLGLGPGPDYHRSPDVAAFPMNMNPSLSSNVNLRFFRCHEYPRLPYNDVPGSLALPVFERGTATCLGVLQIVMPRWDTINYRPQLDNNVCNTYEVFEELYEAAVNEMMEVLTCVCKTHNLPLALTWAPCIQQGKCRYGHSTENYVSTVDGACFVGDGEILGFQEACSEHHLFHGQGIVGTAFATAKPCFAIDITSFTKAEYPMAHHANMFGLHAAVAIPLRSVYTDFVLELFLPKDCHDREQQKHLLNSLSVLLQQACRSLHVVMEDEFTLPQAHNINNSKEGTSPTEGKGVCVSLEYLEVEEPKEEFKVTTNWDSTAAQEQVFSEFGEESHSHTFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYSSFPELSSGPTSESSKSKNNNNSTNSFYGHGHGLKSPSSSSPSTVVNTAAQSPVPQHNFRVKATFADEKIRFSLQPIWGFTDLQLEIARRFNLNDVTNVVLKYLDDEGEWVVLECDGDLEECKDLHTSSHSRTIRLALFQASPLNLPNTFGPS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3723 693 Pfam PB1 domain 599 680 IPR000270 GO:0005515
Ssu6g3723 693 CDD PB1_NLP 599 680 IPR034891 -
Ssu6g3723 693 SUPERFAMILY CAD & PB1 domains 591 683 - -
Ssu6g3723 693 ProSiteProfiles PB1 domain profile. 598 681 IPR000270 GO:0005515
Ssu6g3723 693 PANTHER PROTEIN NLP8 51 683 IPR045012 GO:0003700
Ssu6g3723 693 MobiDBLite consensus disorder prediction 438 462 - -
Ssu6g3723 693 Gene3D - 595 683 - -
Ssu6g3723 693 PANTHER PROTEIN NLP2 51 683 - -
Ssu6g3723 693 Pfam RWP-RK domain 466 513 IPR003035 -
Ssu6g3723 693 MobiDBLite consensus disorder prediction 549 590 - -
Ssu6g3723 693 ProSiteProfiles RWP-RK domain profile. 452 533 IPR003035 -
Ssu6g3723 693 SMART PB1_new 598 681 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3723 Ssu-Chr6 81353729 81356642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3723 23 675 NLP Transcription Factor Family AT1G76350 38.048 9.53e-158 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu6g3723 PB1 8.6e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3723 - - var:108322742 841.647