Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3722 ATGAAGGAGGAATATTCTGATTGTGGTGTGGATGTGGGTGTGGGTGTGGGAAAGAAGCGGAGCAGAATGGAGGGGAAGAGATCAGTATCAGAACCACGTCCGTGCACGGAGTGCGGGAAGAAGTTCTGGTCTTGGAAGGCACTGTTCGGCCACATGCGATGCCACCCGGAGCGTCAGTGGAGAGGGATTAATCCTCCCCCCAACGTCAGAAGacaacaacagcaacagcaACAGCAACAGATGATGACCCAGGAAGATCACGAGGTCGCTGCCTGTTTGCTCCTCCTTGCCAATGCCGacaataaagagaaagagaaagagaaagagaaagaggaagatcACTTCGAGTGCTCCAGTTGCAACAAGGTGTTCGGATCGCACCAGGCTCTTGGAGGCCACCGTGCCAGTCACAAGAACGTCAAGGGCTGTTTTGCCAACGCCAATATTAATGCCATACCCTCtgatgacaacaacaacatcattaGTAGTAGTAGTGATGGGCACAAGTGCAGTATATGCCTCAGGGTCTTCTCCACTGGCCAGGCACTCGGTGGTCACAAGAGGTGTCACTGGGACAAAGGGGACAACCTCCTTGACTCCTCAACCAAGCCTGTCGACTTGAATTTCCCTCCTCCTCATGACCATTGCTCCTCTCCTCCCCTCACTCTCGATTTGAGGTTGGGACTCTAG 690 0.4797 MKEEYSDCGVDVGVGVGKKRSRMEGKRSVSEPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNVRRQQQQQQQQQMMTQEDHEVAACLLLLANADNKEKEKEKEKEEDHFECSSCNKVFGSHQALGGHRASHKNVKGCFANANINAIPSDDNNNIISSSSDGHKCSICLRVFSTGQALGGHKRCHWDKGDNLLDSSTKPVDLNFPPPHDHCSSPPLTLDLRLGL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3722 229 Pfam C2H2-type zinc finger 114 138 - -
Ssu6g3722 229 Pfam C2H2-type zinc finger 168 193 - -
Ssu6g3722 229 Pfam C2H2-type zinc finger 34 57 - -
Ssu6g3722 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Ssu6g3722 229 SUPERFAMILY beta-beta-alpha zinc fingers 32 137 IPR036236 -
Ssu6g3722 229 Coils Coil 92 114 - -
Ssu6g3722 229 MobiDBLite consensus disorder prediction 66 83 - -
Ssu6g3722 229 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Ssu6g3722 229 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Ssu6g3722 229 Gene3D Classic Zinc Finger 18 92 - -
Ssu6g3722 229 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 20 229 - -
Ssu6g3722 229 MobiDBLite consensus disorder prediction 59 83 - -
Ssu6g3722 229 SMART c2h2final6 168 190 IPR013087 -
Ssu6g3722 229 SMART c2h2final6 33 55 IPR013087 -
Ssu6g3722 229 SMART c2h2final6 115 137 IPR013087 -
Ssu6g3722 229 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Ssu6g3722 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 190 IPR013087 -
Ssu6g3722 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Ssu6g3722 229 SUPERFAMILY beta-beta-alpha zinc fingers 166 193 IPR036236 -
Ssu6g3722 229 Gene3D Classic Zinc Finger 95 193 - -
Ssu6g3722 229 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 20 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3722 Ssu-Chr6 81321056 81321745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3722 33 229 C2H2 Transcription Factor Family AT4G35280 54.630 1.29e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu6g3722 zf-C2H2_6 4.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3722 - - gmx:100792631 291.582