Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3716 atggGTTGTTGCCAATCATCGATGTTGctgagagggagagagagggagacTCACCctgaaaaggaaaggaaaaggaaaggagaggaaaaggaaaaggaaaaagagcagGCGTACGGGAAGCAGCAGAGGCAGTCGGAGGGGGAGGGCGAGGGTGTGGATTTCTCGTTCTCGGAGTTCTCTTTGGCGGAGCTGAAGGCGGCAACGAACAATTTCAGCTCGGAGTATATCGTGTCAGAGAGTGGGGAGAAGGCACCGAACCTGGTGTACAAGGGTCGGCTGCAGAACCAGAGCCGTTGGATTGCGGTGAAGAGGTTCAGCAAGGCTGCTTGGCCGGATCCCAAGCAGTTTGTGGAAGAGGCTTCCGGTGTCGGCAAGTTGCGCCATCCAAGGCTTGCTAATTTGATCGGCTACTGCTGCGACGGCGATGAGAGGCTCCTCGTTGCCGAGTACATGCCTAATGACACTCTCGCCAAGCATCTCTTCCACTGGGAAACTCAGACTATTGAGTGGGCCATGCGCTTGCGAGTGGCTCTCTATATCGCACAGGCTTTGCATTATTGCAGTTCTGAGGGGCGCCCCTTATACCACGACTTGAATGCTTACCGTGTTCTCTTCGACCACGAAGGGGATCCGCGTCTCTCCTGTTTTGGTTTTATGAAGAACAGCAGGGATGGCAAGAGTTACAGCACCAATCTTGCTTACACACCTCCTGAATATTTAAGAAACGGAAGGGTCACCCCTGAAAGTGTCATTTACAGCTTTGGAACCGTTCTTCTAGACCTCCTCAGTGGCAAGCACATCCCTCCCAGTCATGCACTTGATATGATACAGGGGAAAAACAATATGCTCTTAATGGATTCACATTTGGAGGGAAAGTTTTCAACAGAAGAGGCAACGGTAGTTGTTAATCTTGCCTCTAAGTGTTTGCAATATGAACCGAGGGAGCGGCCTGATACAAAGGATTTGGTCACAACACTCGCCCCATTGCATACAAAACCCGATGTTCGTTCTCACATCATGCTTGGAATTCCAAAGCACGAGGAGGCTCCATCAACCCCACAACGTCCTCTTTCGGCAATGGGTGAGGCTTGCTCAAGAATGGACCTAACTGCAATACATCAGATCTTGGTTGCAACACACTACAGAGACGATGAAGGAACTAATGAGTTGTCGTTCCAAGAGTGGACTCAACAGATGAGAGATATGCTGGAGGCAAGGAAGCGTGGAGACTATGCTTTCCGTGACAAGGACTTTAAGACAGCCATTGATAACTATTCCCAGTTTATTGATGTTGGAACGATGGTCTCCCCAACTGTTTTTGCAAGGCGCAGTCTATGCTATTTGTTATGTGATCAACCAGATCCTGCGCTACGAGATGCAATGCAAGCACAGTGCGTTTATCCAGACTGGCCCACGGCTTTCTACATGCAATCTGTTGCTCTTGCAAAGCTGGACATGCACAAGGATGCGGCTGATATGTTAAATGAGGCAGCTGCATTGGAAGAGAAGAGGCAAAGAGGAGCGAGAGGATCATAG 1536 0.4733 MGCCQSSMLLRGRERETHPEKERKRKGEEKEKEKEQAYGKQQRQSEGEGEGVDFSFSEFSLAELKAATNNFSSEYIVSESGEKAPNLVYKGRLQNQSRWIAVKRFSKAAWPDPKQFVEEASGVGKLRHPRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWETQTIEWAMRLRVALYIAQALHYCSSEGRPLYHDLNAYRVLFDHEGDPRLSCFGFMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKNNMLLMDSHLEGKFSTEEATVVVNLASKCLQYEPRERPDTKDLVTTLAPLHTKPDVRSHIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIDNYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMHKDAADMLNEAAALEEKRQRGARGS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3716 511 Gene3D Tetratricopeptide repeat domain 400 509 IPR011990 GO:0005515
Ssu6g3716 511 SUPERFAMILY TPR-like 403 504 IPR011990 GO:0005515
Ssu6g3716 511 SUPERFAMILY Protein kinase-like (PK-like) 54 330 IPR011009 -
Ssu6g3716 511 MobiDBLite consensus disorder prediction 1 51 - -
Ssu6g3716 511 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 509 IPR045845 GO:0004672|GO:0009742
Ssu6g3716 511 Gene3D Transferase(Phosphotransferase) domain 1 152 343 - -
Ssu6g3716 511 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK11 1 509 - -
Ssu6g3716 511 Gene3D Phosphorylase Kinase; domain 1 46 150 - -
Ssu6g3716 511 MobiDBLite consensus disorder prediction 11 41 - -
Ssu6g3716 511 Pfam Protein kinase domain 87 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3716 511 ProSiteProfiles Protein kinase domain profile. 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3716 Ssu-Chr6 81219809 81227306 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3716 10 350 Glycoside Hydrolase AT3G07070 31.868 2.05e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Ssu6g3716 Pkinase 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3716 K14500 - gmx:100808907 981.089