Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3713 ATGGAAAAGAGAGGTGACGGTGCTGATGCTGAGCTTCAACTTGATGCTGATTTTGTGCCGGATCCTGCCCAGATATGTACTGGAAATGAAAAGGATGACAAGGCCTTCTCGGTTCCTCACTCCAGACGACCTAATCTATCCTCGCTGCAAATACCGGCATGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCACAAGAGGACTTCCCCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAAGTTTACTTCCTCAGAGGAGCATCAAGACAAATACTTGTTCCCAGGATACTGAAAGGACAGGTCTCATAGTTCCTAACACTCCCCCATCTGATGCTCCTTTGGAtaaaccttccacttcaacccATCTGTCTCTTAATAATAAGGTCATCTCCCCATCAACAAAAGTTGCACATTCATTACCAGTTACTCCATTTGCAACTTCAGCTGCAGAGAATGTACCTGGAAGACATCTAGGGGGTGATTCTGGTTTAAGTaCAATGGAAGTTCATCAGCATATGACTCGGTCATTTTCAGTCCCAGTTAATGGCAAAGCCACTACGAATTTAAGGGTTGCAGATTCTAGGGGCTTGATTCGTGTAATTTCAGCAAAACTGCATCTTGAAACTGTTGGTGGAACCTCAACTGATGGTGCTTTGGTTACAGATATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACCTGTGACGTCTGCAAGCAGGATGTCCAAAACCTCCCAGTAACActgttgaaaatttataatcctCAAACTACTGCTAGGCAGGCATCAAATGTGCCACAACAGACAGAAGTAGCTTATTACAGGATCTGGCAGGATGTACCAGTACTTATTGTGGTCAGCATGCTTGcttacttttgttttctagAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACCATGGTGAGCAGGAGTTTCGTATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTTATCCTGTTTGCTCATGTATTTTATACTATTCTCAATGTTAATGCAATTCTCTCCGTTCTCCTTTCCTCATTCACTGGATTTGGGATTGCAATCAGTATGAATTCTCTCGTTGTGGAATTTATTAGATGGAGAACAAGTAGGCGGATTCAATCCTCCTTTGAGAATGTTGACAGGATAGAGCAGCAGCGCCGTGGGCATGTACAGCAACAGAGACAGGAAGATCAGGGACAACAACAACGACAAAGACAACATCAATGA 1488 0.422 MEKRGDGADAELQLDADFVPDPAQICTGNEKDDKAFSVPHSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRSLLPQRSIKTNTCSQDTERTGLIVPNTPPSDAPLDKPSTSTHLSLNNKVISPSTKVAHSLPVTPFATSAAENVPGRHLGGDSGLSTMEVHQHMTRSFSVPVNGKATTNLRVADSRGLIRVISAKLHLETVGGTSTDGALVTDIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQTTARQASNVPQQTEVAYYRIWQDVPVLIVVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVSRSFVWAYACFQFAILILFAHVFYTILNVNAILSVLLSSFTGFGIAISMNSLVVEFIRWRTSRRIQSSFENVDRIEQQRRGHVQQQRQEDQGQQQRQRQHQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3713 495 MobiDBLite consensus disorder prediction 65 136 - -
Ssu6g3713 495 PANTHER OS02G0165000 PROTEIN 27 481 - -
Ssu6g3713 495 MobiDBLite consensus disorder prediction 90 120 - -
Ssu6g3713 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 310 IPR013083 -
Ssu6g3713 495 Pfam RING-variant domain 255 302 IPR011016 GO:0008270
Ssu6g3713 495 PANTHER OS02G0165000 PROTEIN 27 481 - -
Ssu6g3713 495 MobiDBLite consensus disorder prediction 65 82 - -
Ssu6g3713 495 SMART ringv_2 254 303 IPR011016 GO:0008270
Ssu6g3713 495 ProSiteProfiles Zinc finger RING-CH-type profile. 247 309 IPR011016 GO:0008270
Ssu6g3713 495 MobiDBLite consensus disorder prediction 473 495 - -
Ssu6g3713 495 CDD RING_CH-C4HC3_MARCH 255 303 - -
Ssu6g3713 495 MobiDBLite consensus disorder prediction 1 44 - -
Ssu6g3713 495 SUPERFAMILY RING/U-box 251 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3713 Ssu-Chr6 81184309 81190213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3713 241 309 C3H Transcription Factor Family AT2G37950 44.444 1.77e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3713 - - gmx:100789461 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1956 9 57444627 57453215 Ssu6g3713 6 81184309 81190213 PCT