Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3707 ATGGAGATGCAACAACTCCTTAGCATGGGCTTCCCGGACGAGTTAGCCGCCCAAGCCTTGGCTGCCACCGGCGGTAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAACCCAACTCTAACCCTAATTCCACTTCCACAACTCAGCCCAAGCTCGATCGTTTCTTCCATTCCCAATCCACCACCCCTCCACCTCCACACTCCCAAGAACTTGAAGAAGAGGAACCCTCCAAACGCCCCAAACctagtcattctcattctcattctcaacaaaaacaaaactggCCCTTCAAGACCGCAGACAAGAGACACGCCATTCACGAACCCTTGTACGAGCGGTTGCGTCCCAGAACACTCGACGAGGTGGTCGGTCAGGAGCATCTCCTCGCGACCAACTCCCTTCTTCGATCCGCAATCCAACGCAATCGCCTCCCTTCCATCCTCTTGTGGGGTCCTCCCGGGACCGGTAAGACCACTATCGCCAAAGCCATCGTCAACTCCACAGCCTCAACCTGTTACCGCTTTGTCTCCTTATCTGCCGTCACTAGCGGCGTTAAAGACGTCAGGGACGCCGTTGACGAAGCCAGAAAGCTCAGGCTTAGATCCAACCAAACCACCGTTCTGTTCGTGGACGAGGTTCACAGGTTCAACAAGTCACAACAGGACTCTTTCTTGCCCGTCATTGAAGATGGCAGCATTGTCTTCGTCGGGGCCACCACCGAGAACCCTTCTTTCCATTTGATCACGCCTCTCTTGTCTCGCTGCCGTGTCCTCACCCTTAACCCTCTCCAGCCCCACCATCTTGCCTTGCTTCTAAACCGGGCTGTCACTGACGCTGACAAAGGCTTGGTGCAAAGCGTGGGGGTTCAAGTTCATGTTAGCGAGGATGTTGTTCATTTTATCAGCAACAAATGTGATGGGGATGCTCGGGTGGCCTTGAATGCCTTGGACATTGCAGCTGTTACGGCAGCTGCACGGCTACAACATGGTAAACaaaaggaacaagaagaagaagaagaagaacaagggATGGATCTCCTTCACACAAACGTTACTCTTGTTACTGTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAGGAGCACTATAATCTGATCAGTGCGTTGCACAAGTCTATGAGGGGAAGCGATGCAGATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGAGGGGAAGAGCCTCTTTACATTGCACGCAGACTCATACGGTTCGCAAGTGAGGATGTTGGTTTGGCTGATCCATCCGCTCTTACTCAGGCCGTTTCCTGCTACCAAGCTTGCCACTTCTTGGGAATGCCCGAATGCAATGTCATTCTTGCACAGTCTGTTGCTTACTTGGCCTTAGCACCTAAATCTGTTGCAGTTTATCGTGCAATAGGAGCCGCTCAGGAGGCAGTGAGGGAATCGGCGGGACACAATCAGGGGGTGCCCCTCCATTTGAGGAATGCACCAACCAAATTGATGAAGGAAATTGGGTATGGGAAGGGATACATCTACCCTCCCGACAACCCCACAGCCACACAAACGTACTTGCCACCATCACTTCAAGGCCACAAGTTCCTCCATTGGCCTGACAGGATTCCCTCTGATGGACAAGAATATTAA 1659 0.4991 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKPNSNPNSTSTTQPKLDRFFHSQSTTPPPPHSQELEEEEPSKRPKPSHSHSHSQQKQNWPFKTADKRHAIHEPLYERLRPRTLDEVVGQEHLLATNSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSTASTCYRFVSLSAVTSGVKDVRDAVDEARKLRLRSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVTDADKGLVQSVGVQVHVSEDVVHFISNKCDGDARVALNALDIAAVTAAARLQHGKQKEQEEEEEEQGMDLLHTNVTLVTVDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALTQAVSCYQACHFLGMPECNVILAQSVAYLALAPKSVAVYRAIGAAQEAVRESAGHNQGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPTATQTYLPPSLQGHKFLHWPDRIPSDGQEY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3707 552 Pfam AAA C-terminal domain 292 391 IPR032423 -
Ssu6g3707 552 Gene3D - 470 546 - -
Ssu6g3707 552 CDD AAA 125 258 - -
Ssu6g3707 552 Pfam MgsA AAA+ ATPase C terminal 392 541 IPR021886 -
Ssu6g3707 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 331 IPR027417 -
Ssu6g3707 552 Pfam UBA/TS-N domain 4 35 IPR015940 -
Ssu6g3707 552 Gene3D - 366 469 - -
Ssu6g3707 552 SUPERFAMILY UBA-like 3 45 IPR009060 GO:0005515
Ssu6g3707 552 MobiDBLite consensus disorder prediction 35 69 - -
Ssu6g3707 552 MobiDBLite consensus disorder prediction 35 101 - -
Ssu6g3707 552 Gene3D - 265 340 - -
Ssu6g3707 552 Pfam ATPase family associated with various cellular activities (AAA) 149 259 IPR003959 GO:0005524|GO:0016887
Ssu6g3707 552 CDD HLD_clamp_RarA 265 326 - -
Ssu6g3707 552 SUPERFAMILY post-AAA+ oligomerization domain-like 376 543 IPR008921 GO:0003677|GO:0006260
Ssu6g3707 552 Gene3D - 99 263 IPR027417 -
Ssu6g3707 552 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 15 544 - -
Ssu6g3707 552 Gene3D - 2 51 - -
Ssu6g3707 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Ssu6g3707 552 MobiDBLite consensus disorder prediction 70 84 - -
Ssu6g3707 552 SMART AAA_5 145 265 IPR003593 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3707 111 392 Core DNA Replication Machinery Family AT1G77470 28.374 2.94e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3707 K07478 - gmx:100799257 839.721