Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3702 ATGGCTGCACAAGCTCTAGTATCATCATCATCTCTTGCCTTCTCAGCGGAGGCTGCAAGACACAGTCTTGGAGCAAGATCACTCCAATCTCGTGTTGGGTTCTCCAGAAAAGGCTCCTTTATTGCTAAGGCAGCTTCTACTCCCCCCGTCAagCAAGGAGCGGACAGACCTTTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCTGGTGACTATGGATTTGACCCTCTAGGACTTTCAGACCCTGAGGGAACAGGAGGGTTCATTGAGCCCAAATGGCTAGCATATGGTGAAGTCATCAATGGTCGTTATGCAATGTTGGGTGCAATTGGTGCTATAGCACCTGAAATTCTTGGCAAGGCTGGTCTGATCCCTCAGGAAACAGCACTCCCATGGTTCAAAACCGGTGTGTTCCCACCTGCAGGAACATACAACTACTGGGCAGACTCCTACACACTCTTTGTGTTTGAGATGGCACTGATGGGATTTGCGGAGCACAGAAGATTCCAAGATTGGGCCAAACCAGGCTCTATGGGCAAACAGTACTTCTTAGGACTAGAGAAATATCTGGGAGGTTCTGGTGAGCCAGCTTACCCCGGAGGACCTCTCTTTAACCCTCTTGGTTTTGGTAAGGATGAGAAGTCCTTGAAGGATTTGAAGCTCAAGGAAGTGAAGAATGGAAGGTTGGCTATGTTGGCAATCTTGGGTTACTTTGCTCAAGCTCCTGTGACAGGTGTTGGGCCATTCCAAAACCTCCTAGATCATCTGGCTGATCCCGTGCACAACAACATCTTGACCAGTCTCAAGTTCCACTGA 831 0.4862 MAAQALVSSSSLAFSAEAARHSLGARSLQSRVGFSRKGSFIAKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAIGAIAPEILGKAGLIPQETALPWFKTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQAPVTGVGPFQNLLDHLADPVHNNILTSLKFH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3702 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 275 IPR001344 GO:0009765|GO:0016020
Ssu6g3702 276 SUPERFAMILY Chlorophyll a-b binding protein 55 272 - -
Ssu6g3702 276 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 8, CHLOROPLASTIC 1 275 - -
Ssu6g3702 276 Pfam Chlorophyll A-B binding protein 67 246 IPR022796 -
Ssu6g3702 276 Gene3D Chlorophyll a/b binding protein domain 58 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3702 Ssu-Chr6 81108107 81109331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3702 1 276 Chloroplast and Mitochondria Gene Families AT1G61520 81.522 1.36e-158 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3702 K08909 - gmx:100808379 501.901