Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3699 ATGACGACCATTATTCCACAAAGTGGCAGCCAAAGTGTTTCTTCTAAGTCAGAGTGGTCGTGTGTGAGTGACACAGACCCCCTGAAATGGGGTCAGGCTGCGGATTCACTCAGGGGTAGCCACTTTGACGAAGTAAAACGCATGGTGGCAGAGTACCGGAAGCCAGTGATTTGTGTCGGTGGCGGGGAGACACTAACTATATCTCAGGTGGCTGCCGTTGCTAATCATAACTCACAGGTTAAGGTTGACCTCTCAGAGTCTGCAAGGGCAGGCGTTGAAGCCAGCTGCGAGTGGATCATGGAAAACATTAACAAAGGCACTGCAATTTATGGTGTTACCACCGGCTTTGGTGCTGCCTCCCACAGGCGAACTGAACAAGGCCTTGCTCTTCAGAAGGAAATGGTTAGGTTTTTAAACTGCGCAATATTTGGCTACGAAACAGAGTTATCTCATGCACTGTCTAAATCAGCAACCAGAGCAGCAATGCTTGTGAGGGTAAATACCCTACTTCAAGGGTACTCAGGAATTAGGTTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACCACAATGTCACCCCTATCTTACCATTACGCGGGACAATTACTGCATCTGGGGATTTAATTCCTCTATCCTACATTGTTGCATTGCTAATTGGTAGGCGAAACAGTAAAGCTGTTGGACCCTCTGGAGAGTCCCTTAATGCTAAGGAAGCTTTCCATTTAGCAGGTCTACATGCTGGGTTCTTTGAGTTGAAGCCCAAGGAAGGTGTTGCCCTCGTAAATGGCACAGCCGTTGGGTCTGGCGTAGCTTCTATGGCGCTTTTTGAAGCAAACATATTAGCTTTATTGTCAGAAGTTTTATCAGCAGTTTTTGCTGAAGTAATGCAGGGGAAGCCAGAATTTACACATCATCTTATACATAAGCTGAAGTACCATCCCGGTCAAATTGAAGCTGCCGCTATTATGGAACACATTTTAGATGGAAGCTCTTATGTCAAAAATGCCAAAGTGCAACAGACAGATCTGTTGCAGAAGCCTAGAAAAGATCGATATGCCCTTGTAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAATCATTCGGTATTCAACCAAATCAATTGAAAGGGAAATAAACTCGGTAAATGACAATCCCTTGATTGATGTCACAAGGAATAAGGCTTTGAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCCGTTGCTTCAATTGGCAAACTCATCTTTGCCCAATTTACTGAGCTAGTCAATGATTTGTATAATAATGGGTTGCCATCAAATCTCTCAGCTGGTAGAAACCCAAGTCTAGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATCTAGCAAATCCAGTAACGAGCCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAATTCGTTAGGTTTAATTTCTGCTTTGAAAACTGTCGAAGCCGTTGAGATATTAAAGCTCATGTCTTCCACTTTTCTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTCAAGAACACAGTCAAGAATACTGTAAGCAGAGTTGCACAGAAAACATTAAttacagaagacaaagaagaaattAACCCATTTCGACTTTGTGAGAAAGATTTGCTTAAAGTGGTCGATAGAGAATATGTATTCTCCTACATTGATGATCCCTCCAATGTTACATACCCATTGATGCCAAAACTAAAGCAAGTACTTTATGAACAAGCACACATCAGTGCCATTAATGACAAGAATGTGAGCTTGTTGATTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTCTTGCCAAAGGAAGTTGAAAGTGCAAGGGTGGCTTATGAGAATGGCAATCCAACAATTCCAAACAGAATTAAGGAGTGTAGGTCATATCCACTGTACAAATTTGTCAGGGAGGAGTTAGAGATAGGGTTGCTCACTGGAGAAAAGACTGTCTCACCAGATGAGGaatttgaaaaagtatttaCAGCCATGTCTCGAGCAAAGATCATTGATCCAATTCTGGAATGTCTTGGAGATTGGAACGGGGTTCCCATCCCAATATAA 2151 0.4217 MTTIIPQSGSQSVSSKSEWSCVSDTDPLKWGQAADSLRGSHFDEVKRMVAEYRKPVICVGGGETLTISQVAAVANHNSQVKVDLSESARAGVEASCEWIMENINKGTAIYGVTTGFGAASHRRTEQGLALQKEMVRFLNCAIFGYETELSHALSKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIVALLIGRRNSKAVGPSGESLNAKEAFHLAGLHAGFFELKPKEGVALVNGTAVGSGVASMALFEANILALLSEVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKVQQTDLLQKPRKDRYALVTSPQWLGPQIEIIRYSTKSIEREINSVNDNPLIDVTRNKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVEILKLMSSTFLVALCQAIDLRHLEEIFKNTVKNTVSRVAQKTLITEDKEEINPFRLCEKDLLKVVDREYVFSYIDDPSNVTYPLMPKLKQVLYEQAHISAINDKNVSLLIFEKIGAFEDELKSLLPKEVESARVAYENGNPTIPNRIKECRSYPLYKFVREELEIGLLTGEKTVSPDEEFEKVFTAMSRAKIIDPILECLGDWNGVPIPI 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3699 716 SUPERFAMILY L-aspartase-like 26 716 IPR008948 GO:0003824
Ssu6g3699 716 Gene3D - 530 651 IPR023144 -
Ssu6g3699 716 CDD PAL-HAL 63 527 IPR001106 -
Ssu6g3699 716 Gene3D Fumarase/aspartase (Central domain) 265 711 - -
Ssu6g3699 716 PANTHER HISTIDINE AMMONIA-LYASE 20 716 IPR001106 -
Ssu6g3699 716 Pfam Aromatic amino acid lyase 65 530 IPR001106 -
Ssu6g3699 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 200 216 IPR022313 GO:0016841
Ssu6g3699 716 Gene3D - 17 264 IPR024083 -
Ssu6g3699 716 PANTHER PHENYLALANINE AMMONIA-LYASE 20 716 - -
Ssu6g3699 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 26 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3699 Ssu-Chr6 81096093 81098525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3699 16 716 Monolignol Biosynthesis Gene Families AT2G37040 72.507 0.0 1077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3699 K10775 - gmx:100787872 1271.53