Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3697 atggaaaatattcaaaagagtgaTTCCCTCCCTGGGCAAAATAGCATTTGGATATTGCATTTCCCTATAAAACAAAAGCCTCAGAAGACGTTGCCAGTGGCTCGAGTGGAAATGGCGAAGCTTCCGTGCGACTCCGATGGCGTGTGCATGCTTTGCAAACAGAGGCCCTCTCCCTCCGAAACTCTGGCGTGTCGCACGTGTGCCGCTCCCTGGCACCTTTCTTGCCTCCCTTCACCCCCTCTCTCCCATTCGGACTCCCATTGGGACTGTCCCGATTGTTCTGGCGACACCTCCCACCACGAACCTGTGGCTCCCACCGGCGACCTTGTCTCTGCCATACGCGCCATTCAGTCAGACACCTCCCTCACTGACCAAGAGAAGGCCAAAAAGCGCCAAGAACTCCTTGCCGGCTCCGCGGACCCCTCTAAGGACAAAACCAAAACTACCGATATCTTCGACGGAAGCTTAAATTGCTCCATTTGCATGCAATTACCGGAGAGACCCGTCACGACGCCGTGCGGGCACAACTTCTGCTTGAGATGTTTCGAGAAGTGGATCGGACAGGGGAAGCGCACGTGCGCAAATTGCCGTGCTCAAATCCCGGCGAAGATGGCGAGCCAGCCGCGAATCAACTCTCAGCTGGCCATGGCCATTCGATTGGCGAAGGTGGCTAAGACAGGGTCCTCGGGTCCGCCCAAGGTGTATCACTTCGTCCGCAATCAGGACCGTCCAGACACTGCTTTCACCACAGAGCGAGCCAAGAAGACTGGGAAGGCTAATGCCTGTAGCGGCAAAATCTTTGTCACGGTCCCCCCTGACCATTTTGGGCCTATTCCGGCTGAGAACGACCCCACCAGAAACCGTGGCGTTCTGGTTGGTGACACCTGGGAGGACAGGATGGAGTGCCGGCAGTGGGGTGCTCATTTGCCTCACGTTGCGGGCATTGCTGGGCAGAGTGGCTATGGTGCCCAGTCTGTTGCCCTTTCTGGCGGGTACGAGGATGATGAGGACCATGGGGAGTGGTTCCTTTACACTGGCAGTGGTGGCAGAGATCTAAGTGGTAACAAACGCACCAGCAAGCTGCAATCCTTTGACCAGAAGTTTGAAAGCATGAACGAGGCCTTGAGAGTAAGCTGCCGAAAGGGTTATCCTGTTCGGGTTGTAAGGTCGCACAAGGAAAAACGTTCTTCTTATGCACCAGAAGCTGGAGTGCGTTACGATGGAGTATACAGAATAGAGAAGTGCTGGCGCAAAAATGGAATACAAGGTTGCAAGGTTTGCAGGTATTTGTTCGTGAGATGTGACAATGAGCCAGCACCATGGACAAGTGATGAGTATGGGGACCGTCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCTGTTGATATAACTGAAAGGAAGGGTGATCCATCATGGGATTATGATGAGGAAAAGGGGTGCTGGTTGTGGAACAGGCCTCCACCAGAAAGCAGAAAATCAGTGGACACTGTAAAATCTGAAGATGGGAAAACAGTCAGAATTAAACGAAAAGCAAAAAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGTCAAATCTGTCGCAAGGTGTTGACTTTGCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTCTTGAGGGTGCCTTTTCTGGTCAAAGTTTCATTAGAAACAGGGCATGTCAAAGTGGACGCACCTTACGAGCACAGAAGAATGTCATGAGATGCCCATCATGTTCAAATGACATTGCTGACTTTCTTCAGAATCCACAGGTTAATAGAGAAATGGTTGATGTTATAGAATCACTCCAGCGTCAGGCTGATCAGATGGATGAAAATTTTGAGGAGTCAagtgataaaaataatgaaaatctaCATGATGCAACAGAGGTTTCAAAACCTTGTGATTCTAGTGAGAAGGTTCTGGAGGAAATTAAGGATAATGATCTGAATCAGCCACACAAGCGGAGGAAAGAGTGA 1998 0.498 MENIQKSDSLPGQNSIWILHFPIKQKPQKTLPVARVEMAKLPCDSDGVCMLCKQRPSPSETLACRTCAAPWHLSCLPSPPLSHSDSHWDCPDCSGDTSHHEPVAPTGDLVSAIRAIQSDTSLTDQEKAKKRQELLAGSADPSKDKTKTTDIFDGSLNCSICMQLPERPVTTPCGHNFCLRCFEKWIGQGKRTCANCRAQIPAKMASQPRINSQLAMAIRLAKVAKTGSSGPPKVYHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGPIPAENDPTRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSGYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTSKLQSFDQKFESMNEALRVSCRKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWTSDEYGDRPRPLPKIDELKGAVDITERKGDPSWDYDEEKGCWLWNRPPPESRKSVDTVKSEDGKTVRIKRKAKNVSVKERLLKEFGCQICRKVLTLPLTTPCAHNFCKACLEGAFSGQSFIRNRACQSGRTLRAQKNVMRCPSCSNDIADFLQNPQVNREMVDVIESLQRQADQMDENFEESSDKNNENLHDATEVSKPCDSSEKVLEEIKDNDLNQPHKRRKE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3697 665 SUPERFAMILY FYVE/PHD zinc finger 36 96 IPR011011 -
Ssu6g3697 665 MobiDBLite consensus disorder prediction 120 148 - -
Ssu6g3697 665 CDD RING-HC 158 196 - -
Ssu6g3697 665 ProSiteProfiles Zinc finger PHD-type profile. 46 96 IPR019787 -
Ssu6g3697 665 SMART ring_2 158 196 IPR001841 -
Ssu6g3697 665 SMART ring_2 528 585 IPR001841 -
Ssu6g3697 665 SMART ring_2 49 93 IPR001841 -
Ssu6g3697 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 640 IPR013083 -
Ssu6g3697 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 224 IPR013083 -
Ssu6g3697 665 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 38 646 IPR045134 -
Ssu6g3697 665 SMART G9a_1 280 437 IPR003105 -
Ssu6g3697 665 ProSitePatterns Zinc finger PHD-type signature. 49 93 IPR019786 -
Ssu6g3697 665 SUPERFAMILY PUA domain-like 259 453 IPR015947 -
Ssu6g3697 665 SMART PHD_3 48 94 IPR001965 -
Ssu6g3697 665 MobiDBLite consensus disorder prediction 616 665 - -
Ssu6g3697 665 Pfam Zinc finger, C3HC4 type (RING finger) 156 201 - -
Ssu6g3697 665 SUPERFAMILY RING/U-box 520 611 - -
Ssu6g3697 665 ProSiteProfiles Zinc finger RING-type profile. 528 586 IPR001841 -
Ssu6g3697 665 MobiDBLite consensus disorder prediction 123 148 - -
Ssu6g3697 665 ProSiteProfiles YDG domain profile. 285 433 IPR003105 -
Ssu6g3697 665 Coils Coil 599 626 - -
Ssu6g3697 665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 104 IPR013083 -
Ssu6g3697 665 Pfam SAD/SRA domain 288 436 IPR003105 -
Ssu6g3697 665 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 38 646 - -
Ssu6g3697 665 Pfam RING-type zinc-finger 528 569 IPR027370 -
Ssu6g3697 665 ProSitePatterns Zinc finger RING-type signature. 543 552 IPR017907 -
Ssu6g3697 665 Gene3D - 256 451 IPR036987 -
Ssu6g3697 665 ProSiteProfiles Zinc finger RING-type profile. 158 197 IPR001841 -
Ssu6g3697 665 SUPERFAMILY RING/U-box 151 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3697 Ssu-Chr6 81063087 81066301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3697 40 620 C2H2 Transcription Factor Family AT5G39550 62.290 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3697 K10638 - gmx:100786796 1172.53