Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3682 ATGTTGCGCCTCTTGGCTAGCTACAATATCCTCACTTGCTCCCTCCGTCAACTGCCCGATGGTAAGGCTGAAAGGCACTATGGTCTTCACCCAAAAGCCAAATACTTGGTCAACAATGAAGATGGTGTCTCCGTGGCTGCTTACTTTCTCATGGAACAGGACGAAGTCCTCAAAGACATGTGGTTAGAAGCCAGGATTGTCGGCAACATGAATCAAATATCCCTGCAACGAAACTGTTTTGATATAATTTGTGAATTCATAGATATAGGGTTTAAAGGACTGTGTTCTTTTAGGTACCACTTGACAGATTCAATTCAGAAGGGTGGAGTTCCATTTAACAATGCTTATGGAATGACTGCCTTTGAATTCCGTTTTCAATAA 381 0.4226 MLRLLASYNILTCSLRQLPDGKAERHYGLHPKAKYLVNNEDGVSVAAYFLMEQDEVLKDMWLEARIVGNMNQISLQRNCFDIICEFIDIGFKGLCSFRYHLTDSIQKGGVPFNNAYGMTAFEFRFQ 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3682 126 PANTHER BNAA10G07270D PROTEIN 94 124 - -
Ssu6g3682 126 PANTHER BNAA10G07270D PROTEIN 1 63 - -
Ssu6g3682 126 Gene3D - 1 69 IPR036388 -
Ssu6g3682 126 PANTHER O-METHYLTRANSFERASE 94 124 IPR016461 GO:0008168
Ssu6g3682 126 PANTHER O-METHYLTRANSFERASE 1 63 IPR016461 GO:0008168
Ssu6g3682 126 SUPERFAMILY "Winged helix" DNA-binding domain 1 41 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3682 Ssu-Chr6 80937499 80938156 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3682 1 124 Monolignol Biosynthesis Gene Families AT5G54160 42.742 4.60e-25 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3682 K13066 - gmx:100805999 105.531