Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3681 ATGGAAGAGAACCAAAGGCGGCAGCAGCAGGAGGTAAGTGTAGAGGATGAAGAAGCCTTCCTGTTTGCCATGGAACTAGCGGGTGCTTCTGCTGTCCCCATGGTGCTCAAGTCAGCTTTGGAGCTTGGTGTCTTAGAAACCATTGCCAAGGCTGGTCCTGGAGCTTATCTTTCTCCTTCTCACATAGCTTCTCAGCTGCCAGCAATAAAGAACCCGGATGCACCTGCTATTTTGGATCGCTTGTTGTGCCTCTTGGCTAGCTACAACATCCTCACATGCTCCCTGCAGCCTGATGGTAAGAGTGAAAGGCACTATGCTCTTCACCCAAAAGCCAAATACTTTGTCAACAATGAAGACGGTGTCTCCATCATTGCTTCCTTTCTCATGCAACATGACAAAGTCCTTAAAGACATGTGGTACCACTTGACAAATACAATTCAGGAGGGTGGTCTTCCATTTAACAATGCTTATGGAATGACTGCCTTTGAATTCCATGGCACTAATCCAAGGCTCAACAAGCTTTTCAACGAGGGAATGTCTAATTACTCTAGCATTGTAATGAAGAAAATTCTTGAGACTTATACAGGCTTTGAAGGTGTAGGATCTTTGATTGATGTTGGCGGTGGGATTGGAGTTGGCGTTAATTTTGACTTGCCCCACGTGATTAAAGAAGCTCCATCTTATCCAGGTGTGAAGCATATTGGTGGAGACATCTTTGTCAGTGTTCCAAAAGGTGATGTCATTTTCATGAAGTGGATATGTCATGACTGGAATGACGAACAATGCTTGAAATTACTCAAGAACTGCTATGATTCGCTTCCTGACACCGGGAAGGTGATTTTGGTTGAATGCATTATTCCAGAAACCCCAAACTCTAACTTGGATGCAAAGTGTGTTTTTCAAATGGACGTTATCATGTTGTGTCACAGCTCAGGTGgaaaagagagaacaaagaaAGAGTATGAGGCCTTGGCTAAGGGGGCTGGATTCCAAGGTTTCCGAGTAGCGTGTTGTGTTCTCAACATGTATGTCATGGAGTTACTTAAGAAGGCTTAA 1056 0.4366 MEENQRRQQQEVSVEDEEAFLFAMELAGASAVPMVLKSALELGVLETIAKAGPGAYLSPSHIASQLPAIKNPDAPAILDRLLCLLASYNILTCSLQPDGKSERHYALHPKAKYFVNNEDGVSIIASFLMQHDKVLKDMWYHLTNTIQEGGLPFNNAYGMTAFEFHGTNPRLNKLFNEGMSNYSSIVMKKILETYTGFEGVGSLIDVGGGIGVGVNFDLPHVIKEAPSYPGVKHIGGDIFVSVPKGDVIFMKWICHDWNDEQCLKLLKNCYDSLPDTGKVILVECIIPETPNSNLDAKCVFQMDVIMLCHSSGGKERTKKEYEALAKGAGFQGFRVACCVLNMYVMELLKKA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3681 351 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 349 IPR016461 GO:0008168
Ssu6g3681 351 PANTHER O-METHYLTRANSFERASE 6 350 IPR016461 GO:0008168
Ssu6g3681 351 SUPERFAMILY "Winged helix" DNA-binding domain 15 118 IPR036390 -
Ssu6g3681 351 Pfam Dimerisation domain 34 86 IPR012967 GO:0046983
Ssu6g3681 351 Gene3D - 1 114 IPR036388 -
Ssu6g3681 351 PANTHER BNAA10G07270D PROTEIN 6 350 - -
Ssu6g3681 351 Pfam O-methyltransferase domain 139 331 IPR001077 GO:0008171
Ssu6g3681 351 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 345 IPR029063 -
Ssu6g3681 351 PIRSF O-mtase 1 350 IPR016461 GO:0008168
Ssu6g3681 351 Gene3D Vaccinia Virus protein VP39 115 349 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3681 Ssu-Chr6 80922134 80931208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3681 1 350 Monolignol Biosynthesis Gene Families AT5G54160 60.656 1.06e-159 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3681 K13066 - gmx:100780100 460.685