Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3666 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTggttttgttgttttttctGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACCATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTTTGATTCTGAGGAGGCAGTTGACAAGGTCTTACTTAAGACGTTTCATGAATTAAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGCACCCCACTTGGTGGATATAACTATGGTCTTAATCGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATGCTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCGGATGGTAGATTCAGTCCAGTTGCCGGTGGTCGAAGTGGATTTGCTTCATTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGGTCGGGGAGTAAATCCTTATTTTATTGGCAGCTCCAATAGGTTGGGCAGTCCTGTTGGATATGACAGTGGCAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGCAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCGGGGAGTGGGAGTGTTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAGGGAGGAGGGAACAATATGTCACAAAATAGTGGCAACTTGGGATATGGAGGTGGTGACAACAGTTATGATTTGGGGACTGGGGGGTATGGAAGAAGCACTGGTACCACTTTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCCTTTGCAGacttatacaataataattcaGTTTATGGGGACCCAACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGCGCAGCTTCTGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGTAAGAGTTACAATAGTTTGGACGAATGA 1452 0.4353 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLNRVNSFLNGFTQGYAPSTVGGYGLRADGRFSPVAGGRSGFASFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYFIGSSNRLGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGSVGGNTFGNTGVNWGSSAISGQGGGNNMSQNSGNLGYGGGDNSYDLGTGGYGRSTGTTFAPTSSYSASNGGVDGAFADLYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGKSYNSLDE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3666 483 SMART rrm1_1 7 78 IPR000504 GO:0003723
Ssu6g3666 483 SMART rrm1_1 107 179 IPR000504 GO:0003723
Ssu6g3666 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Ssu6g3666 483 MobiDBLite consensus disorder prediction 428 483 - -
Ssu6g3666 483 Gene3D - 4 88 IPR012677 -
Ssu6g3666 483 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Ssu6g3666 483 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Ssu6g3666 483 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Ssu6g3666 483 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Ssu6g3666 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Ssu6g3666 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Ssu6g3666 483 Gene3D - 103 189 IPR012677 -
Ssu6g3666 483 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 476 - -
Ssu6g3666 483 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Ssu6g3666 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3666 Ssu-Chr6 80518373 80520162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3666 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 33.155 2.60e-15 76.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3666 6 80518373 80520162 Ssu6g3666 6 80518373 80520162 ECH
Ssu9g1914 9 56748085 56749765 Ssu6g3666 6 80518373 80520162 PCT