Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3664 ATGCCTGCAGAGACGTGGAAGAGTTGCGATAACGAAGTGGAAGCGTTTGTGGAGGTTGATCCAACGGGGAGGTTTGGGCGTTACAGCGATCTACTTGGCTGTGGAGCAGTGAAGAAGGTTTACAGAGCGTTTGATCAAGAGGAAGGCATTGAGGTGGCGTGGAATCAGGTTCGGCTGAGGAATTTCAGCGAAGACCCTGTTCTCATCAATCGCCTTCATTCTGAGGTTGACCTGCTCAGAACCCTCAGCAACAAGTACATCATCGTCTGTTACAGTGTCTGGAAGGACGACGAGCACCACACCATCAATTTCATCACTGAGGTCTGCACTTCCGGGAACCTCAGGGATTACCGAAAGAAGCATCGCCATGTCTCCATTAGGGCCCTCAAGAAATGGTCCAAACAGGTGCTCGAGGGATTGGACTATCTTCATACGCATGACCCCTGCATCATTCACAGGGACCTCAATTGCAGTAACATCTTTGTTAACGGCAACATTGGCCAGGTGAAAATTGGTGATCTTGGATTGGCTGCAATAGTGGGAAGGAATCATGCGGCACATTCAATTTTAGGGACACCGGAGTACATGGCACCCGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATATACTCTTTTGGAATGTGTTTGCTTGAAATGGTTACAATGGAGATACCCTACAGTGAATGTGACAGTGTCGCCAAGATATACAAGAAGGTCACGATGGGAATTAAGCCTCAGGCCTTGAGCAAAGTCACAGATCCTGAGGTGATGGCATTCATTGAGAAGTGCATAGCACAGCCAAGGGCAAGACCTTCAGCCACGGATCTCCTTAAGGATCCTTTCTTTTATGAACTCAACAATGATGAAGAATCAACGCCGAGCAACTGA 894 0.481 MPAETWKSCDNEVEAFVEVDPTGRFGRYSDLLGCGAVKKVYRAFDQEEGIEVAWNQVRLRNFSEDPVLINRLHSEVDLLRTLSNKYIIVCYSVWKDDEHHTINFITEVCTSGNLRDYRKKHRHVSIRALKKWSKQVLEGLDYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRNHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDSVAKIYKKVTMGIKPQALSKVTDPEVMAFIEKCIAQPRARPSATDLLKDPFFYELNNDEESTPSN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3664 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 1 288 - -
Ssu6g3664 297 Gene3D Phosphorylase Kinase; domain 1 9 107 - -
Ssu6g3664 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 288 - -
Ssu6g3664 297 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Ssu6g3664 297 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3664 297 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Ssu6g3664 297 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3664 Ssu-Chr6 80491448 80492837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3664 10 284 MAP Kinase Kinase Kinase AT5G55560 79.273 1.77e-172 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu6g3664 Pkinase 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3664 K08867 - gmx:100798280 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3664 6 80491448 80492837 Ssu6g3664 6 80491448 80492837 ECH