Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3661 ATGGTTTCTTCAGACGAAAGTGCAGATCAAAATATCCCTTCTGATAAATTGCAGCAGAGAGTGAATCCTGATAGTGATATTACATTGTCACAAGGTCATGACACTAAAAATGATCTGTCCAAACCAGAGGGAGCAACACGTATTCCTTCTATTGTAGCTAAAAATGAAGAAGGGAAGGATTCTGATGCTACTGCTTGTGCCTTGGAATCAGATCAAGAAGGAAGCACATGCTCTTTACCAGTTGAGAAACATTTGCAGAGCCCTGATACTCTTTCGCATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCAAAAGATGGCTATAACTGGAGAAAATATGGCCAGAAACATGTTAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACACATCCAAACTGCCAGGCGAAAAAGCAATTGCAGCAGTCAAATAATGGGCATATCACAGATTCTATTTGTATTGGTCAGCATAATCATCCTAGACCTCAATCGAACTCCACAGTATCAGTTGAGCGTGTTCTGCCTGTTATTGAACAAGCACCACGCAAACCCTCGTTAGCCAATGTGGAAGACAAAACATCCGTTGAGCATGGATGTATGCCTCAACAGATCAAGCCTTTACATTCCCTTCCGACTACAAAAGTTTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTGACTAAGGCAAAGAATCAGGCTCATGACAATGAGGATCCTGAGTCAAAGCGGCTGAAGAAAGACAATAGTAATGCTGATGCCACTGGAGTTGACATGTCACGTTGTGAATCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATCTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAACTAGTTAAAGGGAACACAAACCCAAGAAGTTACTATCGATGCTCAAATCCTGGCTGCCCCGTCAAAAAGCACGTGGAAAGGGCCTCTCATGattcaaaaattgtaataacTACCTATGAGGGACAACATGATCATGAAATCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAACGGCCACAAATGGCAGGGCAGGAACCAAATCTGGAGGTAATACTGTTTGTGTTGAAACAGGGGAACGCAGCGGCTTGGACTCAGCAAGTAGATTGACTGAGCAACAAAATGACGAGTCAAATACTAAGTCAAAGGCTGGTGATATGGTTGAGTTTCGTGTGATCAACCTTTCCATTGAGGGTcctgaaattaaattaagtgaGCAACAGCAACAAAAAGATAACTTAGGCACTAAAGATGATTCTGTCGGCAATGACATCATATGCCATTCAAGTTCTGGAGTTCTATGTAGGTCAAAAGAACAGCTGAAATGTGAGGTAAAAACTATATCAGAAGGAAGTAAGGATTGCCTTAATGTGATTCCCGTTTGTGATACTCTTAGTACAGAAAGTGAATTTAATAAGCAATCAGCAGCTGATGCAGAACCTGTCCAAAGCTAA 1530 0.4111 MVSSDESADQNIPSDKLQQRVNPDSDITLSQGHDTKNDLSKPEGATRIPSIVAKNEEGKDSDATACALESDQEGSTCSLPVEKHLQSPDTLSHELPPLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSNNGHITDSICIGQHNHPRPQSNSTVSVERVLPVIEQAPRKPSLANVEDKTSVEHGCMPQQIKPLHSLPTTKVSPVNELKAAHLQLTKAKNQAHDNEDPESKRLKKDNSNADATGVDMSRCESRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHEIPPGRTVTHNAATNTHTTATNGRAGTKSGGNTVCVETGERSGLDSASRLTEQQNDESNTKSKAGDMVEFRVINLSIEGPEIKLSEQQQQKDNLGTKDDSVGNDIICHSSSGVLCRSKEQLKCEVKTISEGSKDCLNVIPVCDTLSTESEFNKQSAADAEPVQS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3661 509 MobiDBLite consensus disorder prediction 1 35 - -
Ssu6g3661 509 Pfam WRKY DNA -binding domain 114 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 PANTHER WRKY TRANSCRIPTION FACTOR 1 1 455 - -
Ssu6g3661 509 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 MobiDBLite consensus disorder prediction 1 106 - -
Ssu6g3661 509 MobiDBLite consensus disorder prediction 92 106 - -
Ssu6g3661 509 Gene3D WRKY domain 275 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 MobiDBLite consensus disorder prediction 240 269 - -
Ssu6g3661 509 Gene3D WRKY domain 102 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 SMART WRKY_cls 113 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 SMART WRKY_cls 288 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 MobiDBLite consensus disorder prediction 242 262 - -
Ssu6g3661 509 MobiDBLite consensus disorder prediction 68 85 - -
Ssu6g3661 509 MobiDBLite consensus disorder prediction 383 408 - -
Ssu6g3661 509 ProSiteProfiles WRKY domain profile. 283 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 ProSiteProfiles WRKY domain profile. 108 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g3661 509 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 455 IPR044810 GO:0003700
Ssu6g3661 509 MobiDBLite consensus disorder prediction 389 406 - -
Ssu6g3661 509 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3661 Ssu-Chr6 80472480 80474882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3661 98 370 WRKY Transcription Factor Family AT2G04880 48.746 1.70e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g3661 WRKY 2.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3661 K18834 - gmx:100781219 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3661 6 80472480 80474882 Ssu6g3661 6 80472480 80474882 ECH