Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3660 ATGATGCAGGCATCAGAGCAACATAGAAGTTCAAGTATGTACTATCAACCGTTACAACAAATTGAAGCCTACTGCTTGCCGCAGTATCGGACTCTAAATCATCAGCTATACTACCATGATGGAGGCCATGGAACCCACTTTTCCACTCCAAGTTCTTCTGAACTTTACTGCACACTGGAGTCATCTTCTGTAGCTGGCAGTTTCAGTCTTTACAACTCCTCTTCAACTGTTAGTTTCTCACCTAATGGGAGCCCCATATCGCAGCAAGATTCTCAGTCATATCCACCTGACCAATATCATTCCCCTGAGAATACCTATGGCTCTCCTATGAGTGGTTCCTGCATAACCGATGATTTAAGCAGCTTCAAGCACAAGCTGAGAGAGTTGGAGAGTGTAATGCTTGGCCCTGACTCTGATAATTTTGATAGTTATGACAGTGCCATCAGCAATGGAACCAACTTTGTTTCACTTGAGATGGACAGTTGGAGACAAGCAATGGTGGCAATTTCTAGCAAAAGCCTAAAGCACTTCCTTATTTCATGTGCCAAAGCCATTGCTGACAATGATTTGCTAATGGCACAATGGCTGATGGATGAATTACGGCAGATGGTATCAGTTTCTGGCGATCCAATTCAACGGTTGGGAGCATACATGTTGGAAGGACTTGTTGCGCGATTGGCTGCCTCTGGGAGTTCAATATACAGAGCTTTAAGATGCAAAGAACCAGAAAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTTTGCCCCTACTTCAAATTTGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCTATGAAAGATGAAGACAGAGTTCACATAATTGATTTCCAAATTGCTCAAGGAAGCCAGTGGATCACTTTAATTCAGGCTTTTGCAGCTAGACCTGGGGGGCCACCCCACATCCGGATTACGGGTATTGATGATTCAACATCAGCTTATGCCCGTGGCGGTGGACTGCACATAGTGGGAAGGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCATTTGAATTTCATGCTGCAGCCATCTCTGGTTGTGATGTTCAACTGCATAACCTTGGAGTTCGACCGGGGGAAGCTCTGGCTGTGAATTTTGCATTCATGCTACATCACATGCCGGATGAAAGTGTGAGTACTCGGAATCACAGGGATAGACTGTTGAGGTTGGTTAGGAGACTATCACCTAAGGTGGTGACACTTGTTGAGCAAGAATCTAACACAAACACTGCTGCATTCTTTCCACGTTTCCTTGAAACTTTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTGACTCTTCCCAGAGAGCATAAAGAGAGAATCAATGTTGAGCAGCATTGTTTGGCAAGAGACTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGGGTGGAACGGCATGAGGTGCTTGGGAAGTGGAAGTCAAGATTTGCAATGGCCGGTTTCACTCCTTACCCTTTGAGTTCATTGGTGAATGGTACCATTAAGAAATTGCTTGAGAACTACAGTGATCGATATAGACTTGAAGAGAGAGATGGAGCTCTTTATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGTGCTTGGAAATAG 1635 0.4434 MMQASEQHRSSSMYYQPLQQIEAYCLPQYRTLNHQLYYHDGGHGTHFSTPSSSELYCTLESSSVAGSFSLYNSSSTVSFSPNGSPISQQDSQSYPPDQYHSPENTYGSPMSGSCITDDLSSFKHKLRELESVMLGPDSDNFDSYDSAISNGTNFVSLEMDSWRQAMVAISSKSLKHFLISCAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYRALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGRRLSKLAEHFKVPFEFHAAAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTRNHRDRLLRLVRRLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWKSRFAMAGFTPYPLSSLVNGTIKKLLENYSDRYRLEERDGALYLGWMNRDLVASCAWK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3660 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 544 IPR005202 -
Ssu6g3660 544 Pfam GRAS domain family 174 544 IPR005202 -
Ssu6g3660 544 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 15 544 - -
Ssu6g3660 544 MobiDBLite consensus disorder prediction 79 107 - -
Ssu6g3660 544 ProSiteProfiles GRAS family profile. 165 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3660 Ssu-Chr6 80469154 80470788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3660 13 544 GRAS Transcription Factor Family AT5G48150 65.613 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g3660 GRAS 7.1e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3660 - - gmx:100808300 1027.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3660 6 80469154 80470788 Ssu6g3660 6 80469154 80470788 ECH