Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3657 ATGAAGTCTTGGAAGATTTCATCCAACTGTATTGATGAAAGAAGACTTCAAATGCTGTTAAGCAACGGCATGGTCAGCACTCCACAGTTAATGTGTCCACAGAATCGGGAGTTACAAAAGGAGCATATATGTGTTGCAGACACTGTAGAACCCACAGAACAATGTCCAATTCTTGATGATTATGTCCAGACAAGGCTTGAATTATCATTCCGATGGAAAAATTATGTATCATTGGCCTCGCACTCTGCACTTTCGACTGATTTGGTTAGTTATTTGCTCTGTGGAAAGAACACTGTGCAATCATGGGAATTGAGGGTCTCTGCAATTCGGGATTGTGTGAATTCATCTAATTTAGTTAGAGGATGCTGGTGGGTCCTCATTGGAATTATAATGTCCTGCTTATGTTTACTATGGAGGAGTCAAAAGCAGAAGCTAGTTCAGGGGCATCCAGCTGCACAACAAAAGCAGCTGCAACATTTTGTGCAGGGTTCTTCAAAGGGTGCTGGGAGGTGGAGGAAAAAGTTACTAGTTATATTTGTGTCACTTGGAATAATTGGGTCCGTTTGGTTATTTTGGCACCTAAATATGGACATTATGCggagaagagaagaaatgcTAGCCAATATGTGTGATGAGCGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATACTCTGGCTATCCTTGTATCTACCTTTCACCATGGTAAACATCCTTCTGCAATTGACCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCACTCTGATAGGATGCATTTTGAGAAGCAGCATGGGTggacaattaagaaaatgaaaaccgAGAATGAGGCACTAGTCCAAGATTGTATTCCAGAAAACTTGGATCCAGCACCCATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGTGAAAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACAAGAATCTTCCTTTAGATGCTACACCGGAGCAGCGTATTGAAGCTACTGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTGCCAGCAAGCAAACCATTGTTGTAAATGTTTATGACACAACTAATGCATCTGCACCTATCACAATGTATAGTACTGATGTTGCTGACACTGGCCTACTACACATAAGCAGCCTAGATTTTGGGGATCCTCTACGAAAACATGAGATGCACTGCAGGGCTGCTCTAAAGAAGCTTAAACCGCCACATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCAACAAGGCAAATCCGCCATCTGGAGAGTGAGATAAATGAGAAAATTGAATGTGGGCAAGCATCTGCAGAGATGTTTAGTAACATGTCTTATTGGCACATTCCAATACTAGCAATGACAGCAGACGCAACTCAGGATTCAAATGAAGAGTGCAGTAAGTGTGGAATGGATGACTACGTGTCGAAGCCATTTGAAGAAGAGCAGCTCTATATGGCAATGGCGCGTTTCTTCAAGTCAGATTCATAG 1737 0.4093 MKSWKISSNCIDERRLQMLLSNGMVSTPQLMCPQNRELQKEHICVADTVEPTEQCPILDDYVQTRLELSFRWKNYVSLASHSALSTDLVSYLLCGKNTVQSWELRVSAIRDCVNSSNLVRGCWWVLIGIIMSCLCLLWRSQKQKLVQGHPAAQQKQLQHFVQGSSKGAGRWRKKLLVIFVSLGIIGSVWLFWHLNMDIMRRREEMLANMCDERARMLQDQFNVSMNHVHTLAILVSTFHHGKHPSAIDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMKTENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNKNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYSTDVADTGLLHISSLDFGDPLRKHEMHCRAALKKLKPPHNFDACFMDLQMPEMDGFEATRQIRHLESEINEKIECGQASAEMFSNMSYWHIPILAMTADATQDSNEECSKCGMDDYVSKPFEEEQLYMAMARFFKSDS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3657 578 CDD REC_hyHK_CKI1_RcsC-like 471 570 - -
Ssu6g3657 578 Gene3D CHASE domain 247 469 IPR042240 -
Ssu6g3657 578 Gene3D - 194 246 - -
Ssu6g3657 578 SMART REC_2 435 570 IPR001789 GO:0000160
Ssu6g3657 578 ProSiteProfiles Response regulatory domain profile. 437 574 IPR001789 GO:0000160
Ssu6g3657 578 PANTHER TWO-COMPONENT HISTIDINE KINASE 158 470 - -
Ssu6g3657 578 PANTHER TWO-COMPONENT HISTIDINE KINASE 470 575 - -
Ssu6g3657 578 Gene3D - 470 578 - -
Ssu6g3657 578 ProSiteProfiles CHASE domain profile. 243 467 IPR006189 -
Ssu6g3657 578 Pfam Response regulator receiver domain 469 569 IPR001789 GO:0000160
Ssu6g3657 578 PANTHER HISTIDINE KINASE 2 158 470 - -
Ssu6g3657 578 PANTHER HISTIDINE KINASE 2 470 575 - -
Ssu6g3657 578 SMART CHASE_2 243 442 IPR006189 -
Ssu6g3657 578 SUPERFAMILY CheY-like 469 574 IPR011006 -
Ssu6g3657 578 Pfam CHASE domain 246 440 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3657 Ssu-Chr6 80422065 80431373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3657 469 575 Miscellaneous Gene Families AT5G35750 73.832 9.41e-48 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu6g3657 CHASE 2.6e-34 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3657 K14489 - gmx:100781655 848.966