Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3650 ATGGCCACCTCTGCTGTCCAGCAATCAGCATTCGCGGGTCAGACTGCTTTGAAGCAGGTGAATGAGTTCGTCCGCAAGACCGGTGGCGCCGGCAAAGGTCGCACTAACATGCGCCGTACCGTCAAGAGTGCTCCTCAGAGCATTTGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAGCAGATTCCATCATACTTGACTGGTGAATTTCCCGGTGACTACGGATGGGACACAGCTGGATTATCAGCTGACCCAGAAACCTTCGCCAGGAACCGTGAGCTCGAGGTGATTCACAGCAGATGGGCCATGCTTGGTGCCCTGGGGTGTACCTTCCCGGAAATCCTTGAAAGGAATGGTGTCAAATTCGGCGAGGCAGTGTGGTTCAAGGCTGGTGCCCAGATCTTCTCCGAGGGAGGCCTTGACTATTTGGGCAACCCAAACCTGATCCATGCTCAGAGCATCCTTGCAATCTGGGCCTCCCAGGTTGTGCTCATGGGGTTTGTTGAAGGGTACAGAGTTGGTGGAGGACCGCTTGGTGAAGGACTAGACCCAATCTACCCTGGTGGTGCCTTTGACCCACTTGGTTTGGCTGATGACCCCGATGCATTTGCAGAGTTGAAGGTCAAGGAACTCAAGAACGGTCGCTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCACTGGCAAGGGCCCTATTCAGAACCTCTACGACCATCTTGCTGATCCTGTTACCAACAATGCTTGGGCTTATGCAACTAACTTCACCCCTGGACAATGA 798 0.5338 MATSAVQQSAFAGQTALKQVNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHLADPVTNNAWAYATNFTPGQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3650 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Ssu6g3650 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Ssu6g3650 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Ssu6g3650 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Ssu6g3650 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3650 Ssu-Chr6 80357876 80359184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3650 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 86.038 1.74e-176 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3650 K08913 - gmx:100815789 536.954