Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3649 ATGGATATTGTTCTGAAGGATTTCGAATTGAGTGACAAAGATCGTTCCATCGAAGCTTTGAGAAGATGGAGATCTGCTGTGTCGTTGGTGAATAACCCTCGCAGAAGGTTCCGCTTTGTCGCAGATCTCGTCAAACACGAACACTTTGACTTAcagAAGGCAACAACTTCCAGTGGCGATCATGAGTCTCCTCCGTCAGCACTTTCCTCAGTACCTTACACTCCACTGCCTCCTTCCAGAACCTCCTCTTCCAAATCTAGTGTTGCAATTaatatagaagaagaagaagaagaagaaaaagaagagcgCATTAGGAGTGATATTGCTCGAATTGTGAAGGAGAAGGACTTGAAATCGCTTCATGAGCTTGGTGGGGTTGACCTCGTTTCCTCTGTCCTTGGTCGTCAACGTCAACACTCACAGGAGGGCACTGTTGATGATGGCAACACCACTATACCATTACCAGTTCCTGGAACAAACTTGTCTAAGTTTTCATTGAAAAGCTGCAAATGCTACCGTTGCACAATTTTGATGCTGTTGATCTCAGCTGGGTTGTCATTCGCCTCAGAGTTCAAGCAGGAAGGACCTAAATATGGTTGGCATGATGGTGTTGCTATAGTTTTTGCTGTTCTCCTGCTTGTTGCAGGAGATTCAGTAGCAAACTTTCAGCGTGAgagaaaaatgttgaaattggcAAAGAGAAAGAACGAGTTGGAATTCAGAGTTAAAAGAGGTCAAGAGTCCCTAATGGTTCCCATATCTGATATTGTGGTTGGTAACACAGTGTGCCTGTGGCCAGATGATGAGGTTCCAGCAGATGGTTTGCTTGTAAGTGATGGCATCCTTGTGCTGGCTGAGCCTGAGGCAATAAAAAGCAAACATGATCACCCGTTTCTTATATCTGGTTCAAAGGTGATTGGGGGCCAGGGAAGGATGGTGGTAACATCAGTTAGAAACCAAATGAATTTGGCTGAGATAGGTACTTGTAATTTTGAAAGGAGAGGCTTGTTGGAGAGTCTAATTGAGAAGCCAATTTCTTACGTTGATATAGCTGCTCTTTTTATCTCTGTACTGGTTGCACTTGTGGTGTTCATTCGCCTAATTTGTGGAAAAGATGGGAACAATGGTGGGTTGCCAGAAATGAAAGGGAAGGTCTCAATTAGCTGCTTGATGGAAGCCCTTGAGAGAGTTTTTTTGAGACCACAAGGAAGGGTTTCCATTTTAACAGGTCTTGTTACTGTTACAATACTATGCGTGCAGCATGGAATGCCACTTGTGGTTACAATTTCTCTCAAGTACAAGATTGATAAGGTAGTGCCAAACGAAGATGCAGTTCTTAATGATTTATCAGCTTGTACGACAATGGGGTTGGTAACTGTCATATGTATTGATGTATCAGGCGGGCTCGTATCTAAACCAATGGAGGTTAGCAGAATATGGATGGGGGAGAAAGATATCAGCAAGGTTGAGGGATCAGAAGCAGATCAACCTGTGCTTGACATGCTTAAACAAGGGGTTGGTTTATCAGTCCTTGCACCAGAGATTTCTCTTTCCCCTCTGTCCAATTCACTTGTTGATTGGGCAGAAAAAACATGGGAAATGAACATGAGATCTTTCacagaagaaaattttgacatTCTTAAGCTCAGCAAACTGAATTCTGACAAAGAAGGCAGTGGAATTTTGGTGAGAAAAGTTGGGGACAATGGACAAGTTCTGCACTGGCACTGGAGTGGAGCTGCATCCACAATATTGGAAATGTGTTCACTGTACTATGATGGTAAAGGGAAAGCCCATGCCATGGTAAATCAGAAAATCAAACTTGGGCAGGTGATTAAAGAGATGGAGGATAGCGGGCTTAAGCCAATTGGTTTTGCTTATAGATCAACAGATGCAGAAGAACTTGAGCAAGAAGAATTGATCTTGTTAGGACTGATAGGTCTCAAATACACTAGTCAAGAATCCATAAAACCAGCTTTGGAAAATCTCAGAACTGCTGCAAATGTACAGATCAAACTGGTCTCGGAGGATGACATCATGGTACTGAAAGGCATAGCTTGTGATCTAGGACTAGAACTAGAGCTAGATCATGATAATGTGCTTGAAGGAAAAGAGCTTCAAGATTTGAATGAGGAAGCTAGATTAGACAAAGTGGATCGTGCCCTTGTAATGGGAAACTTCAGTCCTGAAGACAAAGTTCTCATGGTACGGTGCTTGCAAGAGAAAGGTAAGGTGGTTGCATTCATTGGAACAAGGTTGATGACTAGTCATACTTCAGTTCTGAAGGTAGCCGATGTGGGGATAGTTCATGACTCTCTGAGCACGATAGTGGATAGAGATAGGTGTGACATATCTATCAAATGTTTCAGTGCATTGAAACCAATTGTGATGACTGGCAGAAGTAAATACCACAATATTGAGAAGTTCATTCAACTTCAGCTGACATTTACCATATCAGGGTTAGTCATAACGTTGATTACAACAATATTTACTGGAGATTCCCCCCTTGCAGCATTCCAGTTGATTTGGGTGAATGTTTTAGTGTGCCTTCTGGGTGGCCTAATGATGGTAATGAAGCTAACTAGCGAGGAACAGCTTGCCAAACAACCATCTGATCATAGGAACAGGCCAATTATAACCAAAGAAATCTGGAAAAACATTGTTATTCAGGTTTTATATCAGGTTTCTGTGTCAATGACACTCGAGTTTGGGGGACATGTTACTGACAGGGAAAGAAAAGTTAGGGAAACCATGATCTTCAACACATTCCTATTGTGCCAGCTCTTCAATCTGCTCAACACCATACAGTTGTTGAAAAAGGAAGTTTTGAAGGTTGTTGTACAGAGCTTCTGTTTCTTGGGGGCTTTAGGAGGTTGTTTTCTTGTGCAAGTGCTGGTGATTGAGTATGCTGAAGGCCTAGCAGGTTGCATGCGGCTGAATGCTACGAGATGGGCTATCTGTGTCCTTATTGGTGCTCTGTCATGGGCATTGGAATGGACCTTGAAGAATATTCTTCCAGTTATTCTCAGTCCCAGCACCAATTATGCTTCAGAATCAATTACTTCGCCTTCGTTTTATCTTTCTCCAGCTTTCCCATTTCTGTTGATGCTCCTTGTGTTCCCTGTGGGACTAATTTTTAGCCAAATAGGCATGAGCATGACATTTCGTTAG 3171 0.416 MDIVLKDFELSDKDRSIEALRRWRSAVSLVNNPRRRFRFVADLVKHEHFDLQKATTSSGDHESPPSALSSVPYTPLPPSRTSSSKSSVAINIEEEEEEEKEERIRSDIARIVKEKDLKSLHELGGVDLVSSVLGRQRQHSQEGTVDDGNTTIPLPVPGTNLSKFSLKSCKCYRCTILMLLISAGLSFASEFKQEGPKYGWHDGVAIVFAVLLLVAGDSVANFQRERKMLKLAKRKNELEFRVKRGQESLMVPISDIVVGNTVCLWPDDEVPADGLLVSDGILVLAEPEAIKSKHDHPFLISGSKVIGGQGRMVVTSVRNQMNLAEIGTCNFERRGLLESLIEKPISYVDIAALFISVLVALVVFIRLICGKDGNNGGLPEMKGKVSISCLMEALERVFLRPQGRVSILTGLVTVTILCVQHGMPLVVTISLKYKIDKVVPNEDAVLNDLSACTTMGLVTVICIDVSGGLVSKPMEVSRIWMGEKDISKVEGSEADQPVLDMLKQGVGLSVLAPEISLSPLSNSLVDWAEKTWEMNMRSFTEENFDILKLSKLNSDKEGSGILVRKVGDNGQVLHWHWSGAASTILEMCSLYYDGKGKAHAMVNQKIKLGQVIKEMEDSGLKPIGFAYRSTDAEELEQEELILLGLIGLKYTSQESIKPALENLRTAANVQIKLVSEDDIMVLKGIACDLGLELELDHDNVLEGKELQDLNEEARLDKVDRALVMGNFSPEDKVLMVRCLQEKGKVVAFIGTRLMTSHTSVLKVADVGIVHDSLSTIVDRDRCDISIKCFSALKPIVMTGRSKYHNIEKFIQLQLTFTISGLVITLITTIFTGDSPLAAFQLIWVNVLVCLLGGLMMVMKLTSEEQLAKQPSDHRNRPIITKEIWKNIVIQVLYQVSVSMTLEFGGHVTDRERKVRETMIFNTFLLCQLFNLLNTIQLLKKEVLKVVVQSFCFLGALGGCFLVQVLVIEYAEGLAGCMRLNATRWAICVLIGALSWALEWTLKNILPVILSPSTNYASESITSPSFYLSPAFPFLLMLLVFPVGLIFSQIGMSMTFR 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3649 1056 Gene3D - 475 644 IPR023299 GO:0000166
Ssu6g3649 1056 Gene3D - 788 1011 - -
Ssu6g3649 1056 SUPERFAMILY Calcium ATPase, transduction domain A 239 323 IPR008250 -
Ssu6g3649 1056 MobiDBLite consensus disorder prediction 56 89 - -
Ssu6g3649 1056 Pfam Cation transporting ATPase, C-terminus 834 1002 IPR006068 -
Ssu6g3649 1056 Gene3D - 645 787 IPR023214 -
Ssu6g3649 1056 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 47 IPR024750 GO:0005516
Ssu6g3649 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 517 648 IPR023299 GO:0000166
Ssu6g3649 1056 PANTHER CATION TRANSPORTING ATPASE 81 1019 - -
Ssu6g3649 1056 MobiDBLite consensus disorder prediction 52 101 - -
Ssu6g3649 1056 PANTHER CATION-TRANSPORTING ATPASE PLANT 81 1019 - -
Ssu6g3649 1056 Gene3D - 326 474 - -
Ssu6g3649 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1005 IPR023298 -
Ssu6g3649 1056 Gene3D - 213 325 - -
Ssu6g3649 1056 Pfam E1-E2 ATPase 240 431 - -
Ssu6g3649 1056 Gene3D - 15 55 - -
Ssu6g3649 1056 SUPERFAMILY HAD-like 460 852 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3649 Ssu-Chr6 80352119 80355677 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3649 111 1007 Primary Pumps ATPases AT3G22910 34.713 1.84e-143 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3649 K01537 - gmx:102661547 1364.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3649 6 80352119 80355677 Ssu6g3649 6 80352119 80355677 ECH