Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3647 ATGTCCCAAGCAACCACGTCCTCGGCTGGTGGTGATGGTGCCAACATTGAGCTTGGTGCTACCTTACTTGGTGCAACCATCACCAGAGGGAAGTACACCAGGATATGGCGCAAAAGTTTATACGTAGGACTTTTCATCTCTGTGAAGAAGCCAACAACTTCCACTGGCAACCATGAGTCGCCACCATCTCCACTTTCTTCAGTGCCGTACACTTCATTACCTCCTGCTAGAACCTTCTCTTCCAAATCTTATGTTGCAATTGATATAAGAGATGTAGAAGAGTGCATTAGCAGTGATATTGCTCGAATTGTGAAGGACCAGGACTTGAAATCTCTTCAGGAGCTTGGTGGGGTTGACTTCGTTTCCACTGTCCTTGGTAGTCAACGTCAACACTCAGAGCCAGAGGAGGGCACTATTGATGATGGCAACACCACTATACCATTACCAGTTCTTGGAGCAACCAAGTTTTTGTTGAGCAGCTGCAAATGCCACCGTTGCACAATTTTGATGCTGTTGATCTCAGCTGGGTTGTCATTCGCCATAGAGTTCAAGCAGGAGGGACCTAAACATGGTTGGCATGATGGTGTTGCTATAGGTTTTGCTGTTCTCCTGCTTGTTGCAGGAGATTCAGTAGCAAACTTTCAGCGTGAgagaaaaatgttgaaattggcAAAGAGAAAGAACGAGTTGGAATTCAGAGTTAAAAGAGGTCAAGAGTCCCTAATGGTTCCCATATCTGATATTGTGGTTGGTAACACAGTGTGCCTGTGGCCAGGTGATGAGGTTCCAGCAGATGGTTTGCTTGTAAGTGATGGCATCCTTGTGCTGGCTGAGCCTGAGGCAATAAAAAGCAAACATGATCACCCGTTTCTTATATCTGGTTCAAAGGTGATTGGGGGCCAGGGAAGGATGGTGGTAACATCAGTTAGAAACCAAATGAATTTGGCTGAGATAGGTACTTGTAATTTTGAAAGGAGAGGCTTGTTGGAGAGTCTAATTGAGAAGCCAATTTCTTACGTTGATATAGCTGCTCTTTTTATCTCTGTACTGGTTGCACTTGTGGTGTTCATTCGCCTAATTTGTGGAAAAGATGGGAACAATGGTGGGTTGCCAGAAATGAAAGGGAAGGTCTCAATTAGCTGCTTGATGGAAGCCCTTGAGAGAGTTTTTTTGAGACCACAAGGAAGGGTTTCCATTTTAACAGGTCTTGTTACTGTTACAATACTATGCGTGCAGCATGGAATGCCACTTGTGGTTACAATTTCTCTCAAGTACAAGATTGATAAGGTAGTGCCAAACGAAGATGCAGTTCTTAATGATTTATCAGCTTGTACGACAATGGGGTTGGTAACTGTCATATGTATTGATGTATCAGGCGGGCTCGTATCTAAACCAATGGAGGTTAGCAGAATATGGATGGGGGAGAAAGATATCAGCAAGGTTGAGGGATCAGAAGCAGATCAACCTGTGCTTGACATGCTTAAGCAAGGGGTTGGTTTATCAGTCCTTGCACCAGAGATTTCTCTTTCCCCTCTGTCCAATTCACTTGTTGATTGGGCAGAAAAAACATGGGAAATGAACATGAGATCTTTCacagaagaaaattttgacatTCTTAAGCTCAGCAAACTGAATTCTGACAAAGAAGGCAGTGGAATTTTGGTGAGAAAAGTTGGGGACAATGGACAAGTTCTGCACTGGCACTGGAGTGGAGCTGCATCCACAATATTGGAAATGTGTTCACTGTACTATGATGGTAAAGGGAAAACCCATGCCATGGTAAATCAGAAAATCAAACTTGGGCAGGTGATTAAAGAGATGGAGGATAGCGGGCTTAAGCCAATTGGTTTTGCTTATAGATCAACAGATGCAGAAGAACTTGAGCAAGAAGAATTGATCTTGTTAGGACTGATAGGTCTCAAATACACTAGTCAAGAATCCATAAAACCAGCTTTGGAAAATCTCAGAACTGCTGCCAATGTACAGATCAAACTGGTCTCGGAGGATGACATCATGGTAGTGAAAGGCTTAGCTTGTGATCTAGGACTAGAACTAGAGCTAGATCATGATAATGTGCTTGAAGGAAAAGAGCTTCAAGATTTGAATGAGGAAGCTAGATTAGACAAAGTGGATCGTGCCCTTGTAATCGGAAATTTCAGTCCTGAAGACAAAGTTCTCATGGTACGGTGCTTGCAAGAGAAAGGTAAGGTGGTTGCATACATTGGAACAAGGTTGATGACTAGTCATACTTCAGTTCTGAAGGTAGCCGATGTGGGGATAGTTCATGACTCTCTGAGCACGATAGTGGATAGAGATAGGTGTGACATATCTATCAAATGTTTCAGTGCATTGAAACCAATTGTGATGACTGGCAGAAGTAAATACCACAATATTGAGAAGTTCATTCAACTTCAGCTGACATTTACCATATCAGGGTTAGTCATAACGTTGATTACAACAATATTTACTGGAGATTCCCCCCTTGCAGCATTCCAGTTGATTTGGGTGAATGTTTTAGTGTGCCTTCTGGGTGGCCTAATGATGGTAATGAAGCTAACTAGCGAGGAACAGCTTGCCAAACAACCATCTGATCATAGGAACAGGCCAATTATAACCAAAGAAATCTGGAAAAACATTGTTATTCAGGTTTTATATCAGGTTTCTGTGTCAATGACACTCGAGTTTGGGGGACATGTTACTGACAGGGAAAGAAAAGTTAGGGAAACCATGATCTTCAACACATTCCTATTGTGCCAGCTCTTCAATCTGCTCAACACCATACAGTTGTTGAAAAAGGAAGTTTTGAAGGTTGTTGTACAGAGCTTCTGTTTCTTGGGGGCTTTAGGAGGTTGTTTTCTTGTGCAAGTGCTGGTGATTGAGTATGCTGAAGGCCTAGCAGGTTGCATGCGGCTGAATGCTACGAGATGGGCTATCTGTGTCTTGATTGGTGCTCTTTCATGGGCATTGGAATGGACCTTGAAGAATATTCTTCCAGTTATTCTCAGTCCCAGCACCAATTATGCTTCAGAATCAATTACTTCACCTTCGTTCTATCTTTCTCCAGCTTTTCCATTTCTGTTGATGCTCCTTGTGTTACCTGTGGGACTAATTTTTAGCCAAATTGGCATGAGCATGACATTTCGTTAG 3147 0.4236 MSQATTSSAGGDGANIELGATLLGATITRGKYTRIWRKSLYVGLFISVKKPTTSTGNHESPPSPLSSVPYTSLPPARTFSSKSYVAIDIRDVEECISSDIARIVKDQDLKSLQELGGVDFVSTVLGSQRQHSEPEEGTIDDGNTTIPLPVLGATKFLLSSCKCHRCTILMLLISAGLSFAIEFKQEGPKHGWHDGVAIGFAVLLLVAGDSVANFQRERKMLKLAKRKNELEFRVKRGQESLMVPISDIVVGNTVCLWPGDEVPADGLLVSDGILVLAEPEAIKSKHDHPFLISGSKVIGGQGRMVVTSVRNQMNLAEIGTCNFERRGLLESLIEKPISYVDIAALFISVLVALVVFIRLICGKDGNNGGLPEMKGKVSISCLMEALERVFLRPQGRVSILTGLVTVTILCVQHGMPLVVTISLKYKIDKVVPNEDAVLNDLSACTTMGLVTVICIDVSGGLVSKPMEVSRIWMGEKDISKVEGSEADQPVLDMLKQGVGLSVLAPEISLSPLSNSLVDWAEKTWEMNMRSFTEENFDILKLSKLNSDKEGSGILVRKVGDNGQVLHWHWSGAASTILEMCSLYYDGKGKTHAMVNQKIKLGQVIKEMEDSGLKPIGFAYRSTDAEELEQEELILLGLIGLKYTSQESIKPALENLRTAANVQIKLVSEDDIMVVKGLACDLGLELELDHDNVLEGKELQDLNEEARLDKVDRALVIGNFSPEDKVLMVRCLQEKGKVVAYIGTRLMTSHTSVLKVADVGIVHDSLSTIVDRDRCDISIKCFSALKPIVMTGRSKYHNIEKFIQLQLTFTISGLVITLITTIFTGDSPLAAFQLIWVNVLVCLLGGLMMVMKLTSEEQLAKQPSDHRNRPIITKEIWKNIVIQVLYQVSVSMTLEFGGHVTDRERKVRETMIFNTFLLCQLFNLLNTIQLLKKEVLKVVVQSFCFLGALGGCFLVQVLVIEYAEGLAGCMRLNATRWAICVLIGALSWALEWTLKNILPVILSPSTNYASESITSPSFYLSPAFPFLLMLLVLPVGLIFSQIGMSMTFR 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3647 1048 Gene3D - 204 317 - -
Ssu6g3647 1048 Pfam E1-E2 ATPase 232 423 - -
Ssu6g3647 1048 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 509 640 IPR023299 GO:0000166
Ssu6g3647 1048 Gene3D - 637 779 IPR023214 -
Ssu6g3647 1048 Gene3D - 467 636 IPR023299 GO:0000166
Ssu6g3647 1048 SUPERFAMILY Calcium ATPase, transduction domain A 231 315 IPR008250 -
Ssu6g3647 1048 Gene3D - 318 466 - -
Ssu6g3647 1048 Pfam Cation transporting ATPase, C-terminus 826 994 IPR006068 -
Ssu6g3647 1048 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 997 IPR023298 -
Ssu6g3647 1048 Gene3D - 780 1003 - -
Ssu6g3647 1048 PANTHER CATION TRANSPORTING ATPASE 77 1011 - -
Ssu6g3647 1048 PANTHER CATION-TRANSPORTING ATPASE PLANT 77 1011 - -
Ssu6g3647 1048 SUPERFAMILY HAD-like 452 844 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3647 Ssu-Chr6 80336705 80340114 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3647 103 999 Primary Pumps ATPases AT3G22910 34.509 3.39e-146 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3647 K01537 - gmx:102661547 1434.47