Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3640 ATGGAAGCAAACAAAGAGGAAGCACTTAAAGCAATAGAGATTGCTGAAAAGCGATTTGCTCTGAGAGACTTTGCAGGTGCAAAAAACTATGCTGTAAAGGCTAAAACGCTTTGTCCAGGATTGGAGGGTATATCTCAAATGGTGGCCACGTTTGAAGTTTACATTGCTTCTGAGGTCAAACATAATGGCGAGCTAGATTACTATTCGATTCTTGGATTGAAACCTTCTGCAGATAAGGAGGCTGTAAAGAAGCAGTACAAGAAGTTGGCGGTGTTGCTTCACCCAGATAAGAACAAGTGTGTGGGAGCTGATGAAGCATTTAAGCTTGTTTCTGAGGCTTGGACTTGGCTTTCAGATAGTGCTATGCGCAGTTCTTATGATCTCAAGAGAAATGCACAGTTGGGTGGGACTAACCAGACGAATTTGTCTCCTGCCCATGCTACAGGGGCTGCAGGTTATAACAAATGTTCCAATTTGTCAAGCTCTCGTGGTAGGCTTGACACCTTTTGGACAATTTGCACCTCTTGTAAGGTTCAGTATGAGTATCTGCGCAAGTATGTGAATAAAAGACTCTCTTGTAAGAATTGTCGTGGCACTTTTGTTGCTGTTGAAACTGGGGCGGCCCCGGCAAACGGTTCATTTCCATATTGTCCTTGGTCATATGTGCCAGGAAATGGGTACGGAAGTCATTCATTTGATGGAGTTACATATGTTCCAACTAATGCCCCCTATTTCAATGGGAACGGGGTCACAGGATACCATTCTGGACATGGATATGAGTACGTTTCAAATGTTTCATTTCAGTGGGGCTCTGCTGGAGTTGTCAATCAAAATGGATCAACTACCTTACCTGCTGATTCTGTTCATCGGGCCAATGGACATGCGAAGAGGGGAAGACCAAAAGTCAAATCCGGAGCTGATAAGAGGCATCACATTGCAGAGACTATGGTCAATACAAATTCAGATGTACCATTCTCCTGTAGTGAACCACAGGAAGATAAGCTAAGTAGACCTGACAAGAAACAGAAAGTTGTTGTGGGAACCTGTTTCAGAAATGGCTATGAAGAAAAGGGGTCAAAATGTGCTTCAGAGTCAATAGTGGCTAACGGAAATGATAGCATGGGACCTGGCCAGAAGCCTTCCTGCACAGTTGAAGTTCAAACCAAACAGTGTACCACGGCACCGGCATTTGACGCGAGAAAATTATTGATCGAGAAAGCCAGGACAGAAATCAGGAAGAAACTGGAGGAGATGAAGTTGTCATCTGAAGCAGCAGCTGCTGCAGCTctgaatgagaaagaaaaaccaCAAGCTGAAGTTGGTCAGGTCAAAAGAGAGACGTGTAGAAAAGCAGCTCCGAATGTTTCTGGTCTTCAATTAGAGAATGGAAAAAGTGGTCCAATCTCAATTACTGTCCCAGATTCTGACTTTCATGACTTCGACAAAGATAGGTCAGAGGAATGCTTCAGGCCAAAGCAAATATGGGCCTTGTATGATGAGGAAGATGGAATGCCGCGGTTGTATTGTGTGATCCGTGAGGTTGTTTCTGTCAATCCATTTAAGATTCACATCAGTTACTTGAGTTCCAAAACTGATAGTGAGTTTGGCTCAGTAAACTGGCTTGATTCAGGTTTTACCAAATCTTGTGGAAATTTCAGGGCTTTTAATTCAGATGTTGTTGACCAAGTTAACATATTTTCTCATGTTCTAAGCCAGGAGAAGGCTGGTCGAGGTGGTTGCGTCCGCATATATCCCAGAAGTGGAGATATTTGGGCTGTGTATCGAAATTGGTCGCCAGATTGGAACAGATCTACTCCAGATGAAGTGAGGCATCAGTATGAAATGGTTGAGGTGCTGGATGATTACTCTGAGGAACTTGGTGTTTGTGTAAGTCCCCTTATTAAATTGGCCGGATTTAAAACTGTATATCAGAGGAATACAGACAAGAGTGCCATAAAATGGATACCCAAAAGAGAGATGTTGCGCTTTTCACATCAAGTGCCTTCTTGGTTGCTGAAGGGGGAGGCTAGCAATTTGCCTGAAAGGTGTTGGGACCTTGATCCGGCTGCAACTCCAGATGAGCTTCTTCATGCTGCTGCTACAGAACCAAACGCTTTGTAG 2121 0.4347 MEANKEEALKAIEIAEKRFALRDFAGAKNYAVKAKTLCPGLEGISQMVATFEVYIASEVKHNGELDYYSILGLKPSADKEAVKKQYKKLAVLLHPDKNKCVGADEAFKLVSEAWTWLSDSAMRSSYDLKRNAQLGGTNQTNLSPAHATGAAGYNKCSNLSSSRGRLDTFWTICTSCKVQYEYLRKYVNKRLSCKNCRGTFVAVETGAAPANGSFPYCPWSYVPGNGYGSHSFDGVTYVPTNAPYFNGNGVTGYHSGHGYEYVSNVSFQWGSAGVVNQNGSTTLPADSVHRANGHAKRGRPKVKSGADKRHHIAETMVNTNSDVPFSCSEPQEDKLSRPDKKQKVVVGTCFRNGYEEKGSKCASESIVANGNDSMGPGQKPSCTVEVQTKQCTTAPAFDARKLLIEKARTEIRKKLEEMKLSSEAAAAAALNEKEKPQAEVGQVKRETCRKAAPNVSGLQLENGKSGPISITVPDSDFHDFDKDRSEECFRPKQIWALYDEEDGMPRLYCVIREVVSVNPFKIHISYLSSKTDSEFGSVNWLDSGFTKSCGNFRAFNSDVVDQVNIFSHVLSQEKAGRGGCVRIYPRSGDIWAVYRNWSPDWNRSTPDEVRHQYEMVEVLDDYSEELGVCVSPLIKLAGFKTVYQRNTDKSAIKWIPKREMLRFSHQVPSWLLKGEASNLPERCWDLDPAATPDELLHAAATEPNAL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3640 706 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Ssu6g3640 706 CDD DnaJ 66 119 IPR001623 -
Ssu6g3640 706 SUPERFAMILY Chaperone J-domain 59 131 IPR036869 -
Ssu6g3640 706 Gene3D DnaJ domain 55 149 IPR036869 -
Ssu6g3640 706 Pfam DnaJ domain 66 127 IPR001623 -
Ssu6g3640 706 PRINTS DnaJ domain signature 102 122 IPR001623 -
Ssu6g3640 706 PRINTS DnaJ domain signature 86 101 IPR001623 -
Ssu6g3640 706 PRINTS DnaJ domain signature 68 86 IPR001623 -
Ssu6g3640 706 Pfam Domain of unknown function (DUF3444) 469 675 IPR024593 -
Ssu6g3640 706 PANTHER BNAC03G44070D PROTEIN 1 699 - -
Ssu6g3640 706 SMART dnaj_3 65 122 IPR001623 -
Ssu6g3640 706 Coils Coil 404 424 - -
Ssu6g3640 706 MobiDBLite consensus disorder prediction 287 307 - -
Ssu6g3640 706 PANTHER BNAC03G44070D PROTEIN 1 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3640 Ssu-Chr6 80129234 80131354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3640 4 301 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.556 9.49e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3640 - - gmx:100792639 1342.41