Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3637 ATGTCTTCTACTTCTTCttcgtcatcatcatcaacttCAACCCCATATGACCCTGTTGGTGCGGATATCCCTGGCCCTAGTACGAGGAGGGCCGGTCAATTTGAAGGCCCTTCTTCCTCTCGTCAACGTGCTATGTATGAAGTCTTGCCTGAGCCTTTTCTTGAAGCTTTGGCCACCCAAGTTGCTGTTGATGCTGCCAACTACAATGGACGTGTCGCTGCTGCTTCTGCCCTTGCCACTTTATTTCAGGTTTGTTCCACTTGGCGAGAGGTGTCGCGCTCGGATCTGCTGTGGGAGCGCCTCACCAGACGCATCTGGCGACGCACCTATCGACTGAGGGCCACGTGGCAGCTGGAGTTCATCTACTGGCATCGGACGGCCAGGAACTTCGCGACCGGGAGACACTCGTTCTTCATGCCACAGTTCGACCCTTCGGAGCAGCAGGGCCTGATGTGCCGCTGCCTGACCCTCTCCGACACGCACCTCGCGTGCGGCTTCGTGGACGGCACCGTGCGTCTCTTCGACCTCGAAACCCGAGCCCACGTGAGCACCTACTTGTCCCAACACGGCGAACTCCTCGGCCCGTTCTCGCACTCCGTCTCCGGCATCGTGATCATAAACTCGGTTATCATATTCGCGAGGCTGGACGGGGACGTGTACGTGGATTCCATCAACAACGGGCCTGGGCCGAGCCACGCGCGGCGGGCCGTGGTGGGGGATGTTGTTAACAACGGGGTGCTGGTTGGGTTGGCGGGGATTGGGCTTTCCGACACTGGACGCGGGCAGCGAGGAGTGCGTGTTCGCGGCTGGTGGGTGGGCCTGTTCGCGGGGATCGCGGGCCAGGCCTTTCAGATATGGGACGCGTACAGCTGGGAGCGCGTGTTTCTGGGGGGGTCGTTGACGGACGCGGAGGCGGTTAACGGGTGGCACATGCTGACGGAGCTGATGCCGCCGGTGGGTCGGGTGCGCGTGACGGAGCGGGAGTTTGTTGTGGCCTGCACGGCTACGAGGCTGGTTTGTTTCAACTTGCGGAGCCCGGAGGTCTTGTTGCGCGATGTGGGGCCCGCGACGCAGTTCGTGGTGAGTTCGCTGGACGCGAGTCCCGAGGCGTTTGTTGTGGTGGAGACGAGCGGCGTGTGCACGGTTCGGCGCGCCAGCACGTACGAGCGGCTGAGCCGGTTTCGGCTTCGTAGGGCGTCGTGGCTGAGGGGTTTGTTGGGGTGCATGAACCTTGGCTACGTGTTAACCTATTCTCCTGCGCCTGCGCCCCCCCTGAGGGTGTGGGACATTGAGCCCCGTCCGGAACCGTTGTGCGTGACGCTTGCGGTAAGGGGGGGAGACGGGAATAGCATGGTGGCCAGTGAGAGACACGTGGCTATATCGCGGGATGATAATTCCATCGACTTGTTGGATTTTGGCGTACAGGATCCTTAG 1434 0.6053 MSSTSSSSSSSTSTPYDPVGADIPGPSTRRAGQFEGPSSSRQRAMYEVLPEPFLEALATQVAVDAANYNGRVAAASALATLFQVCSTWREVSRSDLLWERLTRRIWRRTYRLRATWQLEFIYWHRTARNFATGRHSFFMPQFDPSEQQGLMCRCLTLSDTHLACGFVDGTVRLFDLETRAHVSTYLSQHGELLGPFSHSVSGIVIINSVIIFARLDGDVYVDSINNGPGPSHARRAVVGDVVNNGVLVGLAGIGLSDTGRGQRGVRVRGWWVGLFAGIAGQAFQIWDAYSWERVFLGGSLTDAEAVNGWHMLTELMPPVGRVRVTEREFVVACTATRLVCFNLRSPEVLLRDVGPATQFVVSSLDASPEAFVVVETSGVCTVRRASTYERLSRFRLRRASWLRGLLGCMNLGYVLTYSPAPAPPLRVWDIEPRPEPLCVTLAVRGGDGNSMVASERHVAISRDDNSIDLLDFGVQDP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3637 477 PANTHER WD40 REPEAT PROTEIN 12, 37 1 475 - -
Ssu6g3637 477 MobiDBLite consensus disorder prediction 1 41 - -
Ssu6g3637 477 Gene3D - 41 131 - -
Ssu6g3637 477 SUPERFAMILY WD40 repeat-like 145 465 IPR036322 GO:0005515
Ssu6g3637 477 PANTHER TRANSCRIPTIONAL REGULATOR STERILE APETALA 1 475 - -
Ssu6g3637 477 MobiDBLite consensus disorder prediction 1 17 - -
Ssu6g3637 477 Gene3D - 148 475 IPR015943 GO:0005515
Ssu6g3637 477 SUPERFAMILY F-box domain 77 125 IPR036047 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Ssu6g3637 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3637 - - gmx:100807240 639.032