Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3625 ATGTTTATGCTGAACCCTGGTGGCAAGGTATTCAGGTACAATCCTGTCCCTCGAGCATTGTCAGGGTCAGGGGTGAATGCATCTAATTCATCTTCACTTGAACGCCCTAATGGTGATTCAGAATCTAGTGAAGGTCAATCTTTGTCCAATAATGGGTTGAATGAGGAAGATTATGATTCCACTAAAGAATCACAACCCACTGCTCCTAATCAAGCAGGAAATTATGGACAAGACCACCAAGCGATGCAGCATTCTTCATCATCTGCACCTTCTGTGCTTGATGATTGCCTTACACAGGCTCCACAACTGGAGCTTGTAGGACATTCAATTGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACGAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAgcttgaaaagaaattaataaaagtcaGAAAGCCATATCTTCATGAATCTCGGCATCTGCATGCTTTGAGAAGAGCACGAGGTAATGGCGGACGTTTTGTGAAGAAAACTGAAGTTGAGGCTTCAAACAACATGAACAGGGAAAAGGATATGGGTGCCAGTTCTGTCCCATTGTCACAGTCAATTAGTCCATCTGGTTTTGAACCATTACCTTCTGATTCAGGCTGA 690 0.4275 MFMLNPGGKVFRYNPVPRALSGSGVNASNSSSLERPNGDSESSEGQSLSNNGLNEEDYDSTKESQPTAPNQAGNYGQDHQAMQHSSSSAPSVLDDCLTQAPQLELVGHSIGYAPFIGMPHARMALPLEMAQEPVYVNAKQYEGILRRRQARAKAELEKKLIKVRKPYLHESRHLHALRRARGNGGRFVKKTEVEASNNMNREKDMGASSVPLSQSISPSGFEPLPSDSG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3625 229 MobiDBLite consensus disorder prediction 21 55 - -
Ssu6g3625 229 ProSiteProfiles NF-YA/HAP2 family profile. 130 190 IPR001289 GO:0003700|GO:0006355
Ssu6g3625 229 Gene3D - 130 192 - -
Ssu6g3625 229 MobiDBLite consensus disorder prediction 201 229 - -
Ssu6g3625 229 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 18 228 IPR001289 GO:0003700|GO:0006355
Ssu6g3625 229 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 132 187 IPR001289 GO:0003700|GO:0006355
Ssu6g3625 229 ProSitePatterns NF-YA/HAP2 subunit signature. 135 155 IPR018362 GO:0003677|GO:0016602
Ssu6g3625 229 MobiDBLite consensus disorder prediction 1 92 - -
Ssu6g3625 229 MobiDBLite consensus disorder prediction 63 92 - -
Ssu6g3625 229 PRINTS CCAAT-binding transcription factor subunit B signature 133 155 IPR001289 GO:0003700|GO:0006355
Ssu6g3625 229 PRINTS CCAAT-binding transcription factor subunit B signature 164 187 IPR001289 GO:0003700|GO:0006355
Ssu6g3625 229 MobiDBLite consensus disorder prediction 191 229 - -
Ssu6g3625 229 SMART cbf3 129 190 IPR001289 GO:0003700|GO:0006355
Ssu6g3625 229 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 18 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3625 Ssu-Chr6 79938426 79940769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3625 1 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 45.669 9.23e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu6g3625 CBFB_NFYA 3.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3625 K08064 - gmx:102664020 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1147 9 43357637 43360413 Ssu6g3625 6 79938426 79940769 PCT