Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3620 ATGGCGCATAGGTTGCTGAGAGACCACGAAGCCGACGGTTGGGAACGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAGGGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTATTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATgtagtaaattgaaaaatgtcTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCTGTTCAAGTCCGAGACACAGCTCTCAATATTGATTCCAATGATGCTATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGCAGGGCTACAGCTGGTATAGATTATGAATCCTCTTACGGTAAAGTATGCCCAAGTGATACTATCCTGAAGCTTCAAAGAACAACACCATATTACAAAAGAAACCGAGCGCATGTTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGAAACTGGGGAATTGtctcaacaaaatattaaagatcGTTATTATGGGGTGAATGATCCAGTGGCCTTGAAGCTACTTGGCAAGGCAGGGGAGATGACCACACTGGAGGCTCCCGATGATGAGAGCATTAAAACTCTCTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATTACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAACTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCGAAACCTGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAGGGAATGCTTCACTATAACAATCCACCACCTCTTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCATCTCAAGATGGTCCTCCTGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCCTGGTTTGGAGAAGCAGCAAATGCAACATTATACCCATCCAATGATGCCTCCTCCACCTGGCCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCGCCAGTACCCCCTTATCAACAGTACCCACCTCCATACAATGCTGCAGTGGCTCCATCCCAGCCCCCAGCTGCGAATCATCCCTATCAGCATTCTATGCAGCCAGGGTCTTCACAGACAGGGTCTGGACAGGCTGCATCAGCCCCAGCTGGAACTGGAACATCAACGTCGGGGTCACAGCGGCAATAA 1455 0.4701 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALNIDSNDAIPKSDVNREYFAEEHDRRATAGIDYESSYGKVCPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMTTLEAPDDESIKTLYVGGLDARVTEQDLRDYFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLHYNNPPPLQQERSYYPSMDPQRMGALVPSQDGPPGGPSGSGENKPGLEKQQMQHYTHPMMPPPPGQYHHQYYPPYGYMPPVPPYQQYPPPYNAAVAPSQPPAANHPYQHSMQPGSSQTGSGQAASAPAGTGTSTSGSQRQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3620 484 MobiDBLite consensus disorder prediction 299 321 - -
Ssu6g3620 484 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Ssu6g3620 484 MobiDBLite consensus disorder prediction 426 484 - -
Ssu6g3620 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Ssu6g3620 484 MobiDBLite consensus disorder prediction 447 484 - -
Ssu6g3620 484 Pfam Torus domain 149 194 IPR032297 -
Ssu6g3620 484 Gene3D - 149 206 - -
Ssu6g3620 484 MobiDBLite consensus disorder prediction 426 440 - -
Ssu6g3620 484 MobiDBLite consensus disorder prediction 334 392 - -
Ssu6g3620 484 MobiDBLite consensus disorder prediction 334 360 - -
Ssu6g3620 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Ssu6g3620 484 Gene3D - 212 310 IPR012677 -
Ssu6g3620 484 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Ssu6g3620 484 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Ssu6g3620 484 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 461 - -
Ssu6g3620 484 CDD RRM_RBM22 227 300 - -
Ssu6g3620 484 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Ssu6g3620 484 SMART rrm1_1 229 297 IPR000504 GO:0003723
Ssu6g3620 484 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 461 IPR039171 GO:0003723
Ssu6g3620 484 MobiDBLite consensus disorder prediction 304 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3620 Ssu-Chr6 79918068 79921743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3620 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 8.78e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3620 K12872 - gmx:100779917 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g0614 9 28465118 28470515 Ssu6g3620 6 79918068 79921743 PCT