Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3614 ATGGCCGGAACCCTAAATCTCATGCCCCTCACTGGTTCCGGCGGGGCTTTTCGGCCTCCGATCAGGGCCTCGATTCGGGCTTTCACAGCGACGGCGTTGGCCGTCGATTCCCGGCGACCGGCGAGCCTCTACGAGGTGCTCCGGATCAAGCAGAACGCGTCGGCGGTGGAAATTAAATCGGCATACCGGAACCTGGCGAAGGTGTATCACCCTGATTCGGCGGTCCGGCGGTCGGAATCCGACGAACGGGACTTCAACTTCATCGAGATCCACGACGCTTACGAGACGCTGTCCGATCCGTCGGCGAGAGCAGTGTATGATCTATCGTTGGTGGCCGCGCGCGGTGGTATTGGTTCGTTCTCGTCTTTGGTAGCTCCGAGTGGCTCCTCCGGATTCTACCAGACCCGGAAGTGGGAAACAGACCAATGCTGGTAG 435 0.6023 MAGTLNLMPLTGSGGAFRPPIRASIRAFTATALAVDSRRPASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSAVRRSESDERDFNFIEIHDAYETLSDPSARAVYDLSLVAARGGIGSFSSLVAPSGSSGFYQTRKWETDQCW 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3614 144 Pfam DnaJ domain 43 107 IPR001623 -
Ssu6g3614 144 ProSiteProfiles dnaJ domain profile. 42 110 IPR001623 -
Ssu6g3614 144 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 22 144 - -
Ssu6g3614 144 CDD DnaJ 44 99 IPR001623 -
Ssu6g3614 144 PRINTS DnaJ domain signature 62 77 IPR001623 -
Ssu6g3614 144 PRINTS DnaJ domain signature 82 102 IPR001623 -
Ssu6g3614 144 PRINTS DnaJ domain signature 44 62 IPR001623 -
Ssu6g3614 144 SUPERFAMILY Chaperone J-domain 42 122 IPR036869 -
Ssu6g3614 144 SMART dnaj_3 41 102 IPR001623 -
Ssu6g3614 144 Gene3D DnaJ domain 30 116 IPR036869 -
Ssu6g3614 144 ProSitePatterns Nt-dnaJ domain signature. 87 106 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3614 Ssu-Chr6 79864269 79864703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3614 44 107 C2H2 Transcription Factor Family AT1G74250 45.455 4.62e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3614 - - gmx:100786034 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3614 6 79864269 79864703 Ssu6g3614 6 79864269 79864703 ECH
Ssu9g1136 9 43168447 43168914 Ssu6g3614 6 79864269 79864703 PCT