Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3612 ATGTCGTCTTGCCCAATGGACAATCCACAACTTGCCCTCTTCCACCTACCGCAAATCCGACCCTTTCAAGATAGCCACGTGGAATTGGTATGGCATTTGTCCGTGGAGAAGAACCGGGTTTCGTTTGTTAAACTATACACAGAAGTATCCAATCTAACGAGAGACAATCCCCCCATTGCATCTTTCATCGTTCGCTTGCTTACTTCTGTCGGAGATCGCAAGGCCTTGGCCCATTCAGAAATAAAAGACAAACTACTAGGCAACAGCGaaagttttgtttggataattgAGGTTCCACTACCTGCGAAATTCATTATTAACATTGAGTTCCTGGATTTGAAGACTACAAATCCAAACGGTGGAGAACCTTGCTCTGTCTGGCCCAACAGATTTTTGCAGCAAAGATCAAATGCAACAGCCCTTGGTTCTCTTGGTCGAATGCTAACAGAAGGCATCCACACAGACATCACAATCAATGCTAGTGAGTCTGATGGAAGCATAGGAGCTCACCGAGCTGTACTTGCTGCTCGTTCGCCTGTGTTCCACAGCATGTTCTCACATAAGCTTAAGGAGAATGATCTTTCTACCATAAATATCTCAGACATGTCAATTGAAGCTTGCCAGGCacttgtaaattatctttatggTACCATCAAAGATGAAGAATTTCTTACCCATAGACTCGCCTTGCTGCATGCAGCTGACAAGTATGACATATATGACTTGAGAGAGGCATGTCATGAGAGTCTGATAGAAGATATTAATGCAAATAATGTACTTGAGAGGCTCCAAAATGCTTCTCTGTATCAATTGCCCAAGCTGAAGACTAGCTGTATGCAATatcttgtaaaatttggtaaattaTTTGACATTCAGGATGATTTCATTTGCTTCTTGCAAAGTGCAGACAGGGATCTGATTTCTGAAGTCTTCCATGAAGTTCTTAATGTCTGGACAGGATTATGA 966 0.4058 MSSCPMDNPQLALFHLPQIRPFQDSHVELVWHLSVEKNRVSFVKLYTEVSNLTRDNPPIASFIVRLLTSVGDRKALAHSEIKDKLLGNSESFVWIIEVPLPAKFIINIEFLDLKTTNPNGGEPCSVWPNRFLQQRSNATALGSLGRMLTEGIHTDITINASESDGSIGAHRAVLAARSPVFHSMFSHKLKENDLSTINISDMSIEACQALVNYLYGTIKDEEFLTHRLALLHAADKYDIYDLREACHESLIEDINANNVLERLQNASLYQLPKLKTSCMQYLVKFGKLFDIQDDFICFLQSADRDLISEVFHEVLNVWTGL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3612 321 PANTHER OS08G0495500 PROTEIN 30 320 - -
Ssu6g3612 321 Gene3D Potassium Channel Kv1.1; Chain A 131 284 IPR011333 -
Ssu6g3612 321 SUPERFAMILY POZ domain 139 252 IPR011333 -
Ssu6g3612 321 CDD BTB_POZ_ZBTB_KLHL-like 153 237 - -
Ssu6g3612 321 ProSiteProfiles BTB domain profile. 154 215 IPR000210 GO:0005515
Ssu6g3612 321 PANTHER OS08G0495500 PROTEIN-RELATED 30 320 IPR044714 -
Ssu6g3612 321 Pfam BTB/POZ domain 147 252 IPR000210 GO:0005515
Ssu6g3612 321 SMART BTB_4 154 254 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3612 Ssu-Chr6 79848454 79850374 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu6g3612 BTB 1.6e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3612 K10523 - gmx:100790186 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3612 6 79848454 79850374 Ssu6g3612 6 79848454 79850374 ECH