Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3608 ATGGGTACTAAATCAGTTGTGGATTTATTGGAGTCTTCATCTGGGGTTCATTTTTCTGGATTTCACATGGATGGATTAGAGCAAAGAAAGGCTGGCACAGAGCAACCTACTACTTCAGCAACTGACATGTATAAACAACCTTTTGTGATAGGAGTTGCCGGTGGAGCAGCATCCGGTAAGACTTCAGTTTGTGATATGATTGTTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACCATAATTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCAATTGCTACGTGTCATGGACAAGTTGAAGCGTGGCCAAGCAGTAGATATTCCAAAGTATGACTTTAAGGGTTACAAGAGTGATGTTTTTCCGGCAAGACGGGTAAACCCAGCGGATGTTATAATTTTGGAAGGTATCCTTGTTTTCCATGATCCAAGAGTGCGGGCATTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTCCGTCTGGCTAGAAGAATTAAGCGTGATACTGCTGACAATGCTCGTGATATTGGAGCTGTGCTTGATCAGTATTCTAAATTTGTGAAGCCGGCTTTTGATGACTTTATTCTTCCCACCAAGAAGTATGCTGATATCATTATGCCCCGTGGAGGAGATAACCATGTGGCTATTGATTTGATTGTACAGCATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATATCCTAACTTATATGTCATTCAGTCTACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAATCACTCCAACTGGATCGGTATACAGCGGCGTGGATTTCTGTAAGAGGTTGTGTGGTGTTTCCATCATCCGGAGGTATCGTTCTAGTCCAGATCAGAAGTCACTTGGGCATTTGATTAAATATTGTTATCCTTGCTACAAATGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGCTAATATATGAGAAGTTGCCTAATGATATCTCAGATAGGCATGTATTATTGTTGGATCCTATCTTAGGCACAGGTAATTCGGCTGTTCAAgcaatttctttacttttaagGAAAGGTGTACCAGAGGCCAACATTATATTTCTCAATCTCATATCAGCACCTCAAGGTGTTCATGTGGTCTGCAAAAGCTTTCCGAGAATAAAAATCGTGACATCTGAGATTGACATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGTGAGTTTGGGGATCGGTACTTTGGAACAGATGATGATGACCCGCAGGTGGTGCCCCCTTCACAGTAG 1503 0.4072 MGTKSVVDLLESSSGVHFSGFHMDGLEQRKAGTEQPTTSATDMYKQPFVIGVAGGAASGKTSVCDMIVQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPEAFDTEQLLRVMDKLKRGQAVDIPKYDFKGYKSDVFPARRVNPADVIILEGILVFHDPRVRALMNMKIFVDTDADVRLARRIKRDTADNARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIMPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRRYRSSPDQKSLGHLIKYCYPCYKWGEYGKCFTSMLQGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPEANIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDIGLNEDFRVIPGMGEFGDRYFGTDDDDPQVVPPSQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3608 500 Pfam Uracil phosphoribosyltransferase 265 488 - -
Ssu6g3608 500 Gene3D - 251 488 IPR029057 -
Ssu6g3608 500 PANTHER URIDINE KINASE 15 491 - -
Ssu6g3608 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 240 IPR027417 -
Ssu6g3608 500 CDD UMPK 49 247 IPR000764 -
Ssu6g3608 500 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Ssu6g3608 500 SUPERFAMILY PRTase-like 250 489 IPR029057 -
Ssu6g3608 500 PRINTS Uridine kinase signature 193 204 - -
Ssu6g3608 500 PRINTS Uridine kinase signature 77 88 - -
Ssu6g3608 500 PRINTS Uridine kinase signature 122 137 - -
Ssu6g3608 500 PRINTS Uridine kinase signature 179 189 - -
Ssu6g3608 500 PRINTS Uridine kinase signature 215 228 - -
Ssu6g3608 500 PRINTS Uridine kinase signature 47 64 - -
Ssu6g3608 500 Gene3D - 43 250 IPR027417 -
Ssu6g3608 500 TIGRFAM udk: uridine kinase 46 247 IPR000764 -
Ssu6g3608 500 PANTHER URIDINE KINASE 15 491 - -
Ssu6g3608 500 CDD PRTases_typeI 373 461 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3608 Ssu-Chr6 79765305 79772512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3608 1 491 PRT Gene Family AT4G26510 78.788 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3608 K00876 - gmx:100798205 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3608 6 79765305 79772512 Ssu6g3608 6 79765305 79772512 ECH