Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3604 ATGTATAGGATTGCCCCCTCTACAATCCCAAAACAGATCACCACTTCTCTTCTCTCAGCAATGTCTGTAAGCTTAAGGAATCTGTCACTTTCTCCCAAAATCTTCTGCCTCACCTTTCTTCTCTTATTAAACTCTCTTTTGTTTCCATGCTGTTACTCCCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAGAACAGTTTAAACAGTACTGCGGATGCATTAGCATCTTGGAATCCTTCCAACCCAACCCCATGCAATTGGTTTGGCGTGCGCTGCAACTTACAAGGAGAGGTGGTTGAGATAAACTTGAAGTCAGTGAACTTGCAAGGCTCATtaccttcaaattttcaacctCTCAGGTCCTTGAAGACTCTTGTCCTCTCATCAACAAACATCACAGGCTGGATTCCAAAGGAAATTGGAGATTATAAAGAGCTCATTGTCATTGATCTCAGTGGCAATTTTCTCTTGGGTGAAATCCCTGAAGAAATTTGCAGACTAAGCAAACTTCAGACTTTAGCTCTGCAAACCAACTTTCTTGAAGGCAACATTCCATCCAACATAGGAAATTTATCAAGTCTTGTGAACTTGACACTCTATGACAACAAACTGAGTGGTGAAATTCCAAAGAGTATTGGCTCCTTAACCGAGCTCCAAGTGTTGAGAGCAGGAGGGAACACAAACCTTAAGGGTGAGGTGCCATGGGACATTGGAAACTGCACCAACTTGGTGGTTTTAGGCCTTGCAGAAACCAGCATTTCCGGGAGTCTTCCTTCTTCAATAGGGATGCTGAAAAGCATTCAGACCATAGCCATTTACACTACTCTTCTGTCAGGCTCTATCCCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCCATCCCAAGTCAAATCGGAGAGCTCAGCAAGCTTCAGAATCTTCTCTTATGGCAAAACAATATAGTTGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTTGAAGTCATAGACTTGTCAGAAAATCTTCTCACAGGTAGCATACCAACCAGTTTTGGTAAGCTATCAAATCTGCAAGGGCTTCAACTGAGTGTTAATAAGCTTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCTCTGACTCAACTGGAAGTTGACAACAATGCTATTTCTGGGGAGATTCCTCCTCTTATTGGCAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTCACAGGAAAAATCCCAGATAGTCTTTCTCAGTGCCAAGACCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGGCTGAGGAACCTCACTAAACTGCTGCTACTTTCCAATGATTTGTCAGGCTGTATACCACCTGAGATAAGTAAGTGCACAAGCCTCTACAGGTTGAGGCTAAATCACAATAGACTGGCAGGTACCATTCCATCTGAGATCACCAACTTGAAGAATTTAAACTTTTTGGATGTGAGCAGCAATCATCTTGTAGGGGAGATTCCTCCAACACTATCCAGATGCCAAAATCTTGAGTTTCTGGACCTCCACTCAAATAGCCTCACTGGTTCAGTTCCAGATAATCTGCCCAAAAACCTTCAGTTAATCGACCTCTCAGACAACAGGCTAACTGGTGAACTGAGTCATTCCATTGGTTCATTAACTGAATTAACCAAACTCAACTTGGGAAAGAATCAGCTCAGTGGAAGCATCCCAGCAGAGATCCTATCTTGCTCCAAGTTACAACTTCTGGACCTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAGTTGCTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGTTGTAACCAGTTTTCTGGTGAAATCCCACCCCAGTTCTCCAGTCTTAGAAAACTTGGAGTGCTTGACCTCTCCCACAACAAGCTTTCAGGGAACTTGGATGCTTTCTCTGACCTtcagaaccttgtttcattGAATGTTTCCTTCAATGACTTCTCTGGAGAATTGCCTAACACCCCATTCTTCCGGAAACTCCCTCTCAGTGATCTCACAGGAAATGATGGTCTCTACATTGTTGGTGGAGTGGTAACTCCAGCTGACAGAAAGGAAGCCAAGGGTCATGCCAGACTGGCTATGAAGATTATAGTGACCATTCTCCTAAGCACCAGTGCAGTACTAGTACTGCTCACAATCCATGTCTTGATCCGTGCTCATGTTGCTAACAAAGCACTCATGGAAAATAACAGTTGGGTGATGACTTTGTATCAGAAGTTTGAAGCCTCTATTGATGACATTGTCCGGAATTTGACATCATCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTCACAGTTCCAAATGGCCAAACACTAGCGGTTAAAAAGATGTGGTCATCGGCAGAGTCTGAAGCATTTACTTCTGAAATTCAAACACTGAGTTCAATTAGACACAAGAACATCATCAAGCTTCTGGGTTGGGGGTCCAGCAAGAACATGAAGCTGCTGTTTTATGACTACCTCCCTAATGGAAGCCTGAGCTCATTACTTCACGGTTCAGGAAAGGGAAAACCAGAATGGGAGACCAGATATGATGTTATGTTAGGAGTGGCTCATGCACTAGCATATTTGCACCATGATTGTGTGCCTTCCATATTGCATGGAGATGTCAAAGCCATAAATGTGTTGTTAGGTCCTGGCAACCAACCTTACCTTGCTGACTTTGGCCTAGCTAGAATTGCAAGTGAAAATGGTGATTATACTAATTCCAAGCCAGTTCAAAGACCCTACCTTGCTGGCTCGTATGGATACATGGCTCCAGAGCAAGCATCTATGCAGCGGATCACCGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTGCTGACAGGAAGGCACCCCCTAGACCCAACACTGCCTGGGGGTGCACACTTGGTTCAGTGGGTTTGGAACAATTTAGCTAGCAAAGGAGACCCATCTGACATTCTTGACCCAAAGCTGAGAGGTAGAACTGATTCTACTATGCATGAAATGCTACAAACTCTAGCCGTGTCATTTCTATGTGTCAGCACCCGTGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTCCAGGAAATTAGAACTGTTGAGGCCTCAAGCACAGGTCCTGATGTGTTAAAGGGAGTTTTAACAGTGCATACTCCTAAGAATGGTGTTCCACATGGAACTTCTAACTGTTCCTTTAATTTGTCAGAGGACTGA 3321 0.4339 MYRIAPSTIPKQITTSLLSAMSVSLRNLSLSPKIFCLTFLLLLNSLLFPCCYSLNEQGQALLAWKNSLNSTADALASWNPSNPTPCNWFGVRCNLQGEVVEINLKSVNLQGSLPSNFQPLRSLKTLVLSSTNITGWIPKEIGDYKELIVIDLSGNFLLGEIPEEICRLSKLQTLALQTNFLEGNIPSNIGNLSSLVNLTLYDNKLSGEIPKSIGSLTELQVLRAGGNTNLKGEVPWDIGNCTNLVVLGLAETSISGSLPSSIGMLKSIQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLQNLLLWQNNIVGTIPEELGSCTQLEVIDLSENLLTGSIPTSFGKLSNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAISGEIPPLIGNLRSLTLFFAWQNKLTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGCIPPEISKCTSLYRLRLNHNRLAGTIPSEITNLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNSLTGSVPDNLPKNLQLIDLSDNRLTGELSHSIGSLTELTKLNLGKNQLSGSIPAEILSCSKLQLLDLGSNSFSGEIPKEVAQIPSLEIFLNLSCNQFSGEIPPQFSSLRKLGVLDLSHNKLSGNLDAFSDLQNLVSLNVSFNDFSGELPNTPFFRKLPLSDLTGNDGLYIVGGVVTPADRKEAKGHARLAMKIIVTILLSTSAVLVLLTIHVLIRAHVANKALMENNSWVMTLYQKFEASIDDIVRNLTSSNVIGTGSSGVVYKVTVPNGQTLAVKKMWSSAESEAFTSEIQTLSSIRHKNIIKLLGWGSSKNMKLLFYDYLPNGSLSSLLHGSGKGKPEWETRYDVMLGVAHALAYLHHDCVPSILHGDVKAINVLLGPGNQPYLADFGLARIASENGDYTNSKPVQRPYLAGSYGYMAPEQASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLVQWVWNNLASKGDPSDILDPKLRGRTDSTMHEMLQTLAVSFLCVSTRAEDRPTMKDTVAMLQEIRTVEASSTGPDVLKGVLTVHTPKNGVPHGTSNCSFNLSED 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3604 1106 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 22 1079 - -
Ssu6g3604 1106 SUPERFAMILY RNI-like 306 679 - -
Ssu6g3604 1106 PRINTS Leucine-rich repeat signature 648 661 - -
Ssu6g3604 1106 PRINTS Leucine-rich repeat signature 436 449 - -
Ssu6g3604 1106 Pfam Protein kinase domain 791 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3604 1106 SUPERFAMILY Protein kinase-like (PK-like) 775 1064 IPR011009 -
Ssu6g3604 1106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Ssu6g3604 1106 Gene3D Phosphorylase Kinase; domain 1 753 861 - -
Ssu6g3604 1106 ProSiteProfiles Leucine-rich repeat profile. 650 672 IPR001611 GO:0005515
Ssu6g3604 1106 SUPERFAMILY L domain-like 52 328 - -
Ssu6g3604 1106 SMART serkin_6 788 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3604 1106 SMART LRR_sd22_2 648 667 - -
Ssu6g3604 1106 SMART LRR_sd22_2 505 534 - -
Ssu6g3604 1106 SMART LRR_sd22_2 192 218 - -
Ssu6g3604 1106 SMART LRR_sd22_2 337 366 - -
Ssu6g3604 1106 SMART LRR_sd22_2 551 577 - -
Ssu6g3604 1106 SMART LRR_sd22_2 289 315 - -
Ssu6g3604 1106 Pfam Leucine rich repeat N-terminal domain 55 94 IPR013210 -
Ssu6g3604 1106 SMART LRR_typ_2 457 481 IPR003591 -
Ssu6g3604 1106 SMART LRR_typ_2 361 385 IPR003591 -
Ssu6g3604 1106 SMART LRR_typ_2 530 553 IPR003591 -
Ssu6g3604 1106 SMART LRR_typ_2 505 529 IPR003591 -
Ssu6g3604 1106 SMART LRR_typ_2 575 599 IPR003591 -
Ssu6g3604 1106 SMART LRR_typ_2 313 337 IPR003591 -
Ssu6g3604 1106 SMART LRR_typ_2 648 670 IPR003591 -
Ssu6g3604 1106 SMART LRR_typ_2 192 216 IPR003591 -
Ssu6g3604 1106 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 22 1079 - -
Ssu6g3604 1106 Gene3D Ribonuclease Inhibitor 211 452 IPR032675 -
Ssu6g3604 1106 Gene3D Ribonuclease Inhibitor 54 210 IPR032675 -
Ssu6g3604 1106 Gene3D Ribonuclease Inhibitor 550 628 IPR032675 -
Ssu6g3604 1106 Gene3D Ribonuclease Inhibitor 453 549 IPR032675 -
Ssu6g3604 1106 Gene3D Transferase(Phosphotransferase) domain 1 862 1078 - -
Ssu6g3604 1106 Pfam Leucine Rich Repeat 553 575 IPR001611 GO:0005515
Ssu6g3604 1106 Gene3D Ribonuclease Inhibitor 629 712 IPR032675 -
Ssu6g3604 1106 ProSitePatterns Protein kinases ATP-binding region signature. 794 817 IPR017441 GO:0005524
Ssu6g3604 1106 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Ssu6g3604 1106 Pfam Leucine rich repeat 630 684 IPR001611 GO:0005515
Ssu6g3604 1106 ProSiteProfiles Protein kinase domain profile. 788 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3604 Ssu-Chr6 79715300 79718721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3604 51 1106 Receptor kinase-like Gene Family AT5G56040 65.453 0.0 1379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu6g3604 Pkinase 2.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3604 - - gmx:100813139 1944.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3604 6 79715300 79718721 Ssu6g3604 6 79715300 79718721 ECH