Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3599 ATGAACATGGCCGCTTCAGATAAAGGAGCTTCTGATGATCAAATTTCACAACTTCCTAGTTGGAGACATAAAGAAGCCTGTACCAAGTTAGAGCTTGGCAATGACTCTGAAGGCAGTGAAAAATTGATCAATGAAGACCCAGAATGCTGTATCTGCTTAGCCAAGTACAAAGACAAAGAGGAAGTTAGACAATTGCCCTGTTCCCATATGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATTACATCCTGCTGCCCTCTTTGCAAACAAGGATTAGAGAGGTAG 288 0.4167 MNMAASDKGASDDQISQLPSWRHKEACTKLELGNDSEGSEKLINEDPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRITSCCPLCKQGLER 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3599 95 ProSiteProfiles Zinc finger RING-type profile. 49 90 IPR001841 -
Ssu6g3599 95 SMART ring_2 49 89 IPR001841 -
Ssu6g3599 95 Pfam Ring finger domain 48 90 IPR001841 -
Ssu6g3599 95 SUPERFAMILY RING/U-box 40 93 - -
Ssu6g3599 95 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 94 - -
Ssu6g3599 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 94 IPR013083 -
Ssu6g3599 95 PANTHER - 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3599 Ssu-Chr6 79670037 79670611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3599 1 93 C3H Transcription Factor Family AT4G26580 67.742 8.01e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3599 - - gmx:100813670 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3599 6 79670037 79670611 Ssu6g3599 6 79670037 79670611 ECH