Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3598 ATGAATTCTCGGTGCTTCCTTCATCCTCAAGAGTATAGCACGGTTccattttcttcaaattctgccACAGAAGATATTGTGGCTGGTGCTCGAAACCGGCCTCCACGTGTCACCCCTCCTTCCCTTTTGGTTCGGATGGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTCAAGAAGAGTTTTTCATTACCAAAATGGATCTAGGTCCAATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTAGAGTTTATTGCCTTGATTGTCCAAATAACCATTACAACATTCACTTTGGCTATTTCCAAGAGGGAGAGACCTGTTTGGCCTATGAGGATATGGATTTCTGGTTATGATATTGGCTGTGTTCTTAACCTGCTGATGCTTTATGGGCGCTACCGTCAAATTTATCTGAGTCAAGGAGATGCTCTCAACCTTTCTGATATGGAACAGCAGAGAAACAACGAAGAAACCAGGATGTCACACTTGATGAATAAATGCCGGACTTCACTTGAGCTTTTTCTTCGCCATATGGTTTGTGATGGGCAATGTTTGGGTTTTTGA 573 0.4136 MNSRCFLHPQEYSTVPFSSNSATEDIVAGARNRPPRVTPPSLLVRMAMRISRARWFTFSRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALIVQITITTFTLAISKRERPVWPMRIWISGYDIGCVLNLLMLYGRYRQIYLSQGDALNLSDMEQQRNNEETRMSHLMNKCRTSLELFLRHMVCDGQCLGF 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3598 190 Coils Coil 149 169 - -
Ssu6g3598 190 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 20 178 - -
Ssu6g3598 190 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3598 Ssu-Chr6 79668608 79669882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3598 38 178 C3H Transcription Factor Family AT5G55970 71.127 7.19e-74 223