Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3595 ATGGAAAATGAAAGAGAAGATGAGATTGAGGACATGTCAATGTCACCCCCATCTCTGGGCTCCATGCAGATTGCAGGGAGTAATGGCTTTGGTCACAGCATGGAGTTCATGTCTCAGGCATACCTTCCAAATATGTACGCAGAGATTGACATAAAAGTTGAGGATTCCAGTTTCAACCAAGATCCTCCCCTCCCCATTTATCTCAAGTTTGAAGATGTAGAGTTTAAGGTGAGAGATAGCCAAGCGGCTTCCAATAACCCTGTGAAAACAATGGTGTCAAAAGTAGCCACACAACCCCACGTGGAGGAAGATAGatacaagaaaattttgaagGGTATCACAGGAAGCATTGGCCCTGGTGAAATTCTTGCTTTGATGGGTCCTTCTGGTAGTGGGAAGACAACCTTGTTGAGGGTTGTAGGGGGaagattagttgacaatgtaaagggGAAGATAACTTATAATGATGTTCGATTTAATCCAGCTGTCAAGAGGAGGATTGGATTTGTGACACAAGAGGATGTGCTTTTCCCACAACTTACAGTAGAGGAAACATTAATCTTCTCTGCATTCTTAAGGCTGCCAACCAATATGAGCAAGCAGCAAAAATATGCAAGAGTGGAGACCACTGTCAAGGAGCTAGGCCTTGAAAGATGTCGCCACACAAAAATAGGTGGAGGATTTCTCAAAAGCATATCTGGAGGAGAAAGGAAGCGAACCAGCATAGGCTATGAAATCCTTGTTGATCCTTCACTGCTGCTACTTGATGAACCAACTTCAGGCCTTGATTCCACCTCAGCAAACAGACTCCTTCTCACTCTTCAGGGACTTGCCAAGGGTGGAAGGACCATAATCACAACAATTCACCAGCCATCCAGCAGAATCTTTCATATGTTTGACAAACTTCTTCTGATATCAGAAGGCTATCCCGTTTACTATGGGAAGGCTAGGGACTCAATGCAGTACTTTTCATCCTTAAGGTTTGCCCCAGAAATACCAATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAATTGAATAACATAAGCGTTCCACAAGATATTTTGAAAGATCAAGAATCTTCTGACTCTTCAAAAGCTTTTATTAAATATCTACAACTCAAGTACAAAGACACACtggaaccaaaagaaaaagaagagaatcaTGGAGCAGCAAACACACCAGAACATCTTCAGCTAGCCATTCAGGTTAAAAGGGAGTGGACATTGAGTTGGTTGGACCAATTTGTTATTCTTTATAAGAGAACATTCAGAGCAAGATGCAAGgactattttgataaattaagaCTAGTTCAAGCACTTGGCATTGCACTTTTGTTGGGGCTACTTTGGTGGAAATCTTCAACCAATACAGAGGCTCAAGTTAGAGATCAGGTAGTTGGTTTAATGTTCTATATCTGTATATTCTGGACATCTTCATGTATTTTTGGAGCAGTCTATGTCTTTCCATTTGAAAAGGTCTACTTGGTGAAAGAAAGGAAAGCAGACATGTATAGACTGAGTGTGTACTATGCAAGCAGCACTCTGTGTGACATGGTGGCGCATGTTTTCTACCCTACTCTTTTCATGCTAATATTATACTTCATGGCTGGATTTAAGAGGACTGTTGCTTGCTTCTTCCTGACGTTGTTTGCTGTGCTGTTAATAGCCATAACAAGTCAAGGGGCAGGAGAACTATTTGGAGCTGCAGTTATGAGCATTCAAAGAGCAGGGATGGTTGCTTCTTTGATACTAATGTTATTCCTTCTCACAGGTGGCTACTATGTCCAGCACGTACCCAAAGTCATGCAGTGGCTGAAGTATTTGTCGTTCGTGTACTATGGGTTCAGGCTTCTTCTAAAAGTGCAGTATTCAGGAGACCAACTATACGAGTGTGAAAGTGAAGGAGGGTGCAGGACACTGCAGAGTTCACCATCATTTGACACTGTAAACTTGAAAGGAGGCTTAACTGAAGCATGGGTTCTGGTAGCCATGGCCATATGCTTCCGTGTGTTTGCTTACTTCTGCCTCCGCAGACGAATTGACGCTTGCAATTAG 2064 0.4118 MENEREDEIEDMSMSPPSLGSMQIAGSNGFGHSMEFMSQAYLPNMYAEIDIKVEDSSFNQDPPLPIYLKFEDVEFKVRDSQAASNNPVKTMVSKVATQPHVEEDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVVGGRLVDNVKGKITYNDVRFNPAVKRRIGFVTQEDVLFPQLTVEETLIFSAFLRLPTNMSKQQKYARVETTVKELGLERCRHTKIGGGFLKSISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLLTLQGLAKGGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKARDSMQYFSSLRFAPEIPMNPAEFLLDLATGQLNNISVPQDILKDQESSDSSKAFIKYLQLKYKDTLEPKEKEENHGAANTPEHLQLAIQVKREWTLSWLDQFVILYKRTFRARCKDYFDKLRLVQALGIALLLGLLWWKSSTNTEAQVRDQVVGLMFYICIFWTSSCIFGAVYVFPFEKVYLVKERKADMYRLSVYYASSTLCDMVAHVFYPTLFMLILYFMAGFKRTVACFFLTLFAVLLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHVPKVMQWLKYLSFVYYGFRLLLKVQYSGDQLYECESEGGCRTLQSSPSFDTVNLKGGLTEAWVLVAMAICFRVFAYFCLRRRIDACN 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3595 687 Pfam ABC-2 type transporter 417 626 IPR013525 GO:0016020|GO:0140359
Ssu6g3595 687 SMART AAA_5 119 310 IPR003593 -
Ssu6g3595 687 Gene3D - 97 327 IPR027417 -
Ssu6g3595 687 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 332 IPR003439 GO:0005524
Ssu6g3595 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 324 IPR027417 -
Ssu6g3595 687 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 683 - -
Ssu6g3595 687 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 3 683 - -
Ssu6g3595 687 Pfam ABC transporter 110 260 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3595 Ssu-Chr6 79631910 79636996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3595 108 293 Calmodulin-binding Proteins AT2G36910 29.843 5.53e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3595 K05681 - gmx:100815259 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3595 6 79631910 79636996 Ssu6g3595 6 79631910 79636996 ECH