Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3573 ATGCCCATTGCGTGCGTGCAAAGGCTGATACGCAAGGTTCTTCCGAAGCATGCGAAAGTCACGGACGAATCGAAGGAAACAATACTCGAGTGTGTGACCGAGTTCATCAGCTTTATCACTGGGGAGGCTAACCACCACTGCAAAGTGGAGCGACGAAAAACTGTGACGGCCGAAGATTTAATATATGCTATGGGGAAGGTAGGTTTCTATGAATATGCTGAGCTTCTCACCATTTACCTCCATCGCTATCGTCAGCATCATGAAGGTGCTAACCGCGTCCCACATCGTATGGGCTCCCTTCCTACACTGCCAACAAATGCACCAATGTTCCCACCATCACCTTCTTTTGTTACTGGTTTCCCAATGATGCCTCCAAACCCATTCTCATTTCCAAACCCAATGAGTGATGGGTCAAGTGGTGGCCGCTTTAGCAGTGCCAATGTTTACTATGATCCTCCTGTTGCTTACTTTAATCGTGACAACTACTTCCGTAACTGA 498 0.4759 MPIACVQRLIRKVLPKHAKVTDESKETILECVTEFISFITGEANHHCKVERRKTVTAEDLIYAMGKVGFYEYAELLTIYLHRYRQHHEGANRVPHRMGSLPTLPTNAPMFPPSPSFVTGFPMMPPNPFSFPNPMSDGSSGGRFSSANVYYDPPVAYFNRDNYFRN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3573 165 SUPERFAMILY Histone-fold 1 99 IPR009072 GO:0046982
Ssu6g3573 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 64 IPR003958 -
Ssu6g3573 165 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Ssu6g3573 165 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Ssu6g3573 165 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Ssu6g3573 165 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 1 113 - -
Ssu6g3573 165 Gene3D Histone, subunit A 1 98 IPR009072 GO:0046982
Ssu6g3573 165 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 113 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3573 Ssu-Chr6 79358866 79359363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3573 1 100 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.000 1.06e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu6g3573 CBFD_NFYB_HMF 7e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3573 K08065 - ini:109174641 129.028