Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3569 ATGGCGGACTCGGACAACGACTCGGGAGGGGCGCAGAACGCGGGGGGCAACCATGGTCACGGCAGCGAGTTGTCGCCTCGGGAACAGGACCGGTTCCTTCCCATCGCCAACGTGAGCAGGATCATGAAGAAGGCCCTCCCCGCCAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTCCAAGAATGCGTTTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACCATCAACGGCGACGACCTCCTCTGGGCCATGACCACCCTCGGCTTCGAGGACTACGTCGAGCCCCTCAAGATTTACCTCCAGCGCTTCCGGGAAATGGAGGGCGAGAAGACCGTCGCCGCGCGCGACAAGGACGCCGCCGTACCCGTCAACGCCTACGACTACCCTCCCTCCGCCGCCATCATGCACCATCAGGGACACGTGTACGGCTCCCCCGCCTTCCATCAAGTGCCCGTCACTGGCGCTAGTGCCGCTCCTGTTGTGGGTAAGCCCGGGCCCACTTATCCTGCTCCTGGTAGACCCAGATAG 564 0.633 MADSDNDSGGAQNAGGNHGHGSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKTVAARDKDAAVPVNAYDYPPSAAIMHHQGHVYGSPAFHQVPVTGASAAPVVGKPGPTYPAPGRPR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3569 187 MobiDBLite consensus disorder prediction 1 19 - -
Ssu6g3569 187 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 132 - -
Ssu6g3569 187 Gene3D Histone, subunit A 20 137 IPR009072 GO:0046982
Ssu6g3569 187 SUPERFAMILY Histone-fold 29 129 IPR009072 GO:0046982
Ssu6g3569 187 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu6g3569 187 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Ssu6g3569 187 MobiDBLite consensus disorder prediction 1 29 - -
Ssu6g3569 187 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Ssu6g3569 187 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Ssu6g3569 187 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Ssu6g3569 187 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3569 Ssu-Chr6 79317369 79317932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3569 1 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.921 8.73e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu6g3569 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3569 K08065 - gmx:100813580 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1089 9 42463605 42466952 Ssu6g3569 6 79317369 79317932 PCT