Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3564 ATGGCCAACAATGGTGTAAAGGAGCCCTTGCTGTCAGGATCACTGGATGCAACTCAAAAGGCTAAACGgcagttaaacaagagaaggcTTCTCCGTTCTAAAAGTGCTCCTGGCACAGATCTTGTTCCTACTGAGACAAATGGCAATGAGTCAATTCCCCCTATGGTGtccatatttcaaaatttacatcCAAGCTTTAAAAGAGTGGCTATCTACCTTGCAATCTATTTGGGTGTAGGTGCTTTAATCTTCTACCTTGTCGGGAACCAGATTAAGGGGCTGAAAACAGATGGAATTCTTGATGCTTTATACTTTACTATTGTGACAATGACCACTGTTGGATATGGAGATCTTGTGCCCAATACCAACCTTACAAAACTACTTGCATGTGCTTTCGTATTTTCTGGAATGGCATTGATTGGACTAATTCTAAGCAAAGCAGCAGACTACTTGGTTGAGAAACAGGAATTTTTGCTAGTTAAAGCTATGCACATGCACCAAAAAGTTGGTCCAACTGAGATTTTAAAAGAGGTTGAGACCAATAAAACAAAGTACAAATTTCTTGTggtctttttccttcttttgatTCTCATCATTTCTGGGACAATTTTTTTGGTCACTGTTGAGAAATTGGATATTATTGATGCATTCTACTGTGTGTGTTCAACATTTACAACCCTGGGTTATGGGGATAAAAGTTTCTCAACTCAAGCAGGAAGAATATTTGCTGTTTTTTGGATATTGACAGGTACTATTTGTTTAGCTCAGTTTTTCCTCTACATTGCTGAGCTAAAGACTGAAAGCAGACAAAAGGCACTTGTTAAGTGGGTTCTTACAAGGAAAATAACCAATTTAGATTTGGAGGCTGCAGATCTTGATAACGATGGGACTGTTGGgGCTGCTGAATTCGTTATTTATAAGCTCAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGCAGGAGTTTGAACAGCTTGATGTTGATGATTCTGGTACGCTGTCACGTTCTGATATAAAACTTGCTCAGTCATCTTAG 1047 0.3677 MANNGVKEPLLSGSLDATQKAKRQLNKRRLLRSKSAPGTDLVPTETNGNESIPPMVSIFQNLHPSFKRVAIYLAIYLGVGALIFYLVGNQIKGLKTDGILDALYFTIVTMTTVGYGDLVPNTNLTKLLACAFVFSGMALIGLILSKAADYLVEKQEFLLVKAMHMHQKVGPTEILKEVETNKTKYKFLVVFFLLLILIISGTIFLVTVEKLDIIDAFYCVCSTFTTLGYGDKSFSTQAGRIFAVFWILTGTICLAQFFLYIAELKTESRQKALVKWVLTRKITNLDLEAADLDNDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSRSDIKLAQSS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3564 348 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 18 341 - -
Ssu6g3564 348 Gene3D - 63 157 - -
Ssu6g3564 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 18 341 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g3564 348 SUPERFAMILY Voltage-gated potassium channels 66 166 - -
Ssu6g3564 348 Pfam Ion channel 72 152 IPR013099 -
Ssu6g3564 348 Pfam Ion channel 193 263 IPR013099 -
Ssu6g3564 348 Gene3D - 191 252 - -
Ssu6g3564 348 SUPERFAMILY Voltage-gated potassium channels 180 283 - -
Ssu6g3564 348 ProSitePatterns EF-hand calcium-binding domain. 291 303 IPR018247 -
Ssu6g3564 348 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Ssu6g3564 348 Gene3D - 253 347 - -
Ssu6g3564 348 PRINTS Two pore domain K+ channel signature 108 136 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g3564 348 PRINTS Two pore domain K+ channel signature 225 234 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g3564 348 SUPERFAMILY EF-hand 279 344 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3564 Ssu-Chr6 79252272 79253413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3564 53 348 Ion Channels AT5G55630 67.568 4.56e-152 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3564 K05389 - gmx:100777388 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3564 6 79252272 79253413 Ssu6g3564 6 79252272 79253413 ECH