Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3560 ATGGCTAAGATGAGGTTATCAGCTttggtttttttggttttgttgttGAAGTGTGTTCCGGTGCAAGGCGATGATAGTGATCATGCTAGAAACTTCATTACGTGGGACGACTTCATGGTGGATGAACATGGTATGGCATCCAATGTTGGTGGTCGAGTTATTGTGGTCGATCAAAGCGGTAACGGAGATTCAACAACTGTTCAAGGGGCTGTAGATATGGTTCCCCAAAACAACACAGAAAGGGTGAAGATATGCATTTATCCTGGAACTTATAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTTATTTCATTTATAGGCAAACCTAATATAACAATCAATGCAAATGAGGCAAATATAACGGCCAATGCCAACGCACTAAATATAACGGACATTGCCAATGCCATACCTATTATCACAAATAGTACTAAGGCATCAGACAAAGGCTCCGACGGCCAAGAAATGGGCACGGTTAGTACAGCAACTGTATGGGTAGAATCTGATTTCTTCTGCGCAACTGTTCTTACAATTGAGAATTTGGTAGATAAAGATGCAGATAAACGTCAAGCAGTAGCATTGCGTGTAGACGGTGATAAAGCTGTATTCTACCGAGTTAGGCTTGTGGGGGAGCAGGACACCCTCCTAGATAACACAGGAATCCATTATTTCTATCGAAGTTACATTCAAGGATCCGTTGATTTTATATGTGGCGACGCAAAATCATTGTTCCATGAGTGTGAACTATACTCTGTAGCTGAGTTTGGGGGAGCAATTGCAGCTCATCACAGGGATTCAGCAGATGAAGATACAGGGTTTTCATTTGTTGGTTGCACAATCAAAGGAACTGGTAGTATCTTTCTTGGGAGAGCTTGGGGGGAGTATGCAACAACAGTATATTCCTACTGTTACATGGATGATATTATTAATCCCTTGGGATGGAGCGATTGGAATAATTCATCTAGACAAGGGTATCATACCAACTCATTTAAAGGATCtcaattAgttgtgtttttgtttgttttggttttccTGATGTGGGTTCAGGTGGATTTAGCAGAAGGTGGTAATGGCCACGGTGGTGTTAGGAATTACATTAGTTGGGAAGATTTGCAGGTGGATGAGCAAAGGTTAGCCTTGAAGTCCCATAACGAGCTTCGAGTTATTATTGTTAACCAGAATGGTGGGGGACATTCCAAAACTGTTCAAGGTGCCGTGGATATGGTTCCAGATAACAACAAACAAAGGGTGAAAATTTACATTTATCCAGGAATTTACAGAGAAAAAGTGCTTGTGCCCATCACCAAGCCTTATGTATCATTTATAGGGAAAAGAAATCAAACAGCAAGTGCTGTTATTACTTGGAACAGTAAGTCATCTGACAAAGGCCCAAATGGCCAAGCACTGGGCACATATGATTCAGCAACAGTGGGAGTGGACTCAGATTATTTCTGTGCAACTGAGGTTACTTTTGAGAACACAGTGGTTGCATCGGCTGGTGGAAAAGGGATGCAAGGAGTGGCACTGAGGGTAAACAGTGCAAGAGCCATGTTCTACCGAGTGAGGATTAAAGGAACACAGGACACTCTCTTGGACAACACAGGAACACATTACTTTTTAAAGTGTCACATTATAGGAAAAGTTGATTTTATCTGTGGCAGTGCAAAATCACTCTATGAGAATTGTCGTCTTCAGTCAATAGCTGAGACCTATGGAGCCATAGCAGCACATCATAGGAATTCACCAAGAGAAGATACAGGTTTTTCTTTTGTAGGGTGCAGTATTAGAGGAACTGGCAGTGTGTACCTTGGCAGAGCATGGGGGAACTACTCAAGAATTATATACTCCAAATGTAATATGGATGGTATTGTTAATCCTAAAGGCTGGTCAGAATGGAATCATCCAGAGAGAAAGAAGACTGCAGAGTTTGCTGAGTATCAATGCAATGGAAGAGGAGCAGATAGAAGACATAGGGTGCCTTGGTCAAAATCATTCAGATATCAGGAAGCAAGGCCTTTCCTTTACAGGAGCTTCATAGATGGAGAGCAGTGGCTGAGACTGTAG 2064 0.4123 MAKMRLSALVFLVLLLKCVPVQGDDSDHARNFITWDDFMVDEHGMASNVGGRVIVVDQSGNGDSTTVQGAVDMVPQNNTERVKICIYPGTYRERVHVPKSKPFISFIGKPNITINANEANITANANALNITDIANAIPIITNSTKASDKGSDGQEMGTVSTATVWVESDFFCATVLTIENLVDKDADKRQAVALRVDGDKAVFYRVRLVGEQDTLLDNTGIHYFYRSYIQGSVDFICGDAKSLFHECELYSVAEFGGAIAAHHRDSADEDTGFSFVGCTIKGTGSIFLGRAWGEYATTVYSYCYMDDIINPLGWSDWNNSSRQGYHTNSFKGSQLVVFLFVLVFLMWVQVDLAEGGNGHGGVRNYISWEDLQVDEQRLALKSHNELRVIIVNQNGGGHSKTVQGAVDMVPDNNKQRVKIYIYPGIYREKVLVPITKPYVSFIGKRNQTASAVITWNSKSSDKGPNGQALGTYDSATVGVDSDYFCATEVTFENTVVASAGGKGMQGVALRVNSARAMFYRVRIKGTQDTLLDNTGTHYFLKCHIIGKVDFICGSAKSLYENCRLQSIAETYGAIAAHHRNSPREDTGFSFVGCSIRGTGSVYLGRAWGNYSRIIYSKCNMDGIVNPKGWSEWNHPERKKTAEFAEYQCNGRGADRRHRVPWSKSFRYQEARPFLYRSFIDGEQWLRL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3560 687 Pfam Pectinesterase 389 681 IPR000070 GO:0030599|GO:0042545
Ssu6g3560 687 Pfam Pectinesterase 54 121 IPR000070 GO:0030599|GO:0042545
Ssu6g3560 687 Pfam Pectinesterase 149 320 IPR000070 GO:0030599|GO:0042545
Ssu6g3560 687 Gene3D - 384 687 IPR012334 -
Ssu6g3560 687 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 325 - -
Ssu6g3560 687 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 343 687 - -
Ssu6g3560 687 PANTHER PECTINESTERASE QRT1 13 325 - -
Ssu6g3560 687 PANTHER PECTINESTERASE QRT1 343 687 - -
Ssu6g3560 687 SUPERFAMILY Pectin lyase-like 51 322 IPR011050 -
Ssu6g3560 687 Gene3D - 34 336 IPR012334 -
Ssu6g3560 687 SUPERFAMILY Pectin lyase-like 388 685 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3560 Ssu-Chr6 79197081 79214881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3560 335 639 Carbohydrate Esterase AT5G55590 53.538 2.90e-120 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3560 K01051 - gmx:100813382 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3560 6 79197081 79214881 Ssu6g3560 6 79197081 79214881 ECH