Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3559 atGGCGGTTTATTCTCTTTCTGCACCACTAGTTCCTACGCTTTCTCTCTCCAACGCTTCCTCTTCTCTCTGTTCCAAGTCAAACTTTGCGTTTTTTCACTCTCTCTTTGGTAACAACTCAAAGCTCAGAAGCCCAAAACCCCTGCACTTATCAACTAGGGTTTATGCTGCGCCCGAAGTGTTGGATTCTCCAGAACCTATAGACCCACCTCCAGAAACCCTAGATGATGAATCTGACTCCATCAACTTTGAGGCTTGTGCATTTCTTCATTTTGTTGGAAGCTTGGAGTCTTGGAGTACTTTGTCAATTAGCATTGGTGCAGATGCAAATACGATGGCACCAAAGCAGAAAATTAGAATCAAGCTTAGATCTTATTGGGTGCCCCTTGTAGAGGATTTGTGCAAGCAAATACTAGACGCAGCAAGGACTACCAATGCAAAAACCATGGGTCCTGTACCATTACCAACTAAGAAGCGAGTTTACTGTGTTCTTAAATCCCCACATGTACATAAGCATGCTCAATTTCATTTTGAGATCAGAATCCATCAGCGTCTTATTGATATTCTGTACCTTACTGCCCAAACAATAGATTCTTTGATGCAACTTGATCGGTGTTGA 618 0.4239 MAVYSLSAPLVPTLSLSNASSSLCSKSNFAFFHSLFGNNSKLRSPKPLHLSTRVYAAPEVLDSPEPIDPPPETLDDESDSINFEACAFLHFVGSLESWSTLSISIGADANTMAPKQKIRIKLRSYWVPLVEDLCKQILDAARTTNAKTMGPVPLPTKKRVYCVLKSPHVHKHAQFHFEIRIHQRLIDILYLTAQTIDSLMQLDRC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3559 205 ProSitePatterns Ribosomal protein S10 signature. 141 156 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu6g3559 205 PRINTS Ribosomal protein S10 family signature 117 130 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu6g3559 205 PRINTS Ribosomal protein S10 family signature 152 167 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu6g3559 205 PRINTS Ribosomal protein S10 family signature 173 187 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu6g3559 205 TIGRFAM rpsJ_bact: ribosomal protein uS10 116 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu6g3559 205 Gene3D Ribosomal protein S10 domain 105 204 IPR036838 -
Ssu6g3559 205 SUPERFAMILY Ribosomal protein S10 117 203 IPR036838 -
Ssu6g3559 205 SMART Ribosomal_S10_2 119 204 IPR027486 -
Ssu6g3559 205 Hamap 30S ribosomal protein S10 [rpsJ]. 115 202 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu6g3559 205 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 1 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
Ssu6g3559 205 Pfam Ribosomal protein S10p/S20e 119 201 IPR027486 -
Ssu6g3559 205 PANTHER BNAC05G40270D PROTEIN 1 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3559 Ssu-Chr6 79190537 79193168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3559 117 189 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 33.784 1.24e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3559 K02946 - gmx:100306286 264.233