Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3552 ATGTTGTCTGTTTTCTCACCACTTTCCCTCGTACACCCTGCCACTGGTGTTCTCCTCAAACCCGTTTTCCCTCATGGCCTATCCGGCTTCCTCCACCTTCTGTTGCTCGTGGCGGTTTTGCTGTCATGGGTTTGGAAGAAAATCGCAGCAGGTGCTAGGGATGAGTCAAAGGAGAAACGCAATAACACCTTCTTCAAAACGACCGTGTTTTGTTCACTTGGTGTTTCTGCTTTCAGTTTTGTCCTCtgtttgtttaatttcttcTACTGGTATACAAGTGGCTGGTCAGAAGAAAAGCTCGTGACCCTTTTGGATTTGGCGCTCAAAACACTTGCGTGGGGCGCTGTTTGTGTTTGCCTGCACAAGGGGTTCTTCAGTTCCGGTGAAAGAAGGTTCTCATTCTTCTTCAGAGTTTGGTGCGCCTTCTTCCTCTTTGTTTCTTGTTATTGCTTGGGGGTGGACATTGTTGTTATCTCCGAGAGACGCGTTGCTTTGCCAACTCAGTACTTGGTTTCTGATGTGGTATTCACTTGTGTTGGTTTGTTCTTCTGTTACGTGGGGTATTTTGTGAAAAACGAGGGTCATGATTACGGTCTTCGAGAAAAAGAAGATAGCGGTATTCAGGAACCTCTTTTGAATGGTGATACAAATGTTGGTGATGCCTTGGGGTCAAAAGAGACCAAGGGCGGGGACACTGTTACCCCTTTTTCATATGCTGGAATTTTGAGCATTCTTACTTTCTCTTGGGTGGGTCCTCTTATAGCTGTTGGCAATAAGAAGACCTTGGACCTTGAGGATGTTCCTCAACTAGACAGCAGAGATAGTGTGGTTGGTGCTTTTCCAACTTTCAGAGATAAACTTGAGGCTGATTGTGGTGCAATAAATAGTGTTACCACACTTAAGCTGGTGAAGTCATTGGTAATGTTAGTGTGGAGGGAGATTCTTTTCACAGCTTTTCTTGCATTGTTAAACACTTTGGCTTCTTATGTTGGTCCTTATCTTATTGATAGTTTTGTTCAATACCTTGATGGGCAACGGCAGTATGAAAACCAGGGCTATGTTTTGGTTTCTGCATTTTTCTTTGCAAAGCTAGTAGAGTGTCTGTCTCAAAGGCATTGGTTCTTTAGGTTGCAGCAAATTGGACTCCGAATGAGAGCGCTGCTTGTCACAATGATCTATAACAAGGCTTTGACCCTTTCTTGTCAATCAAAGCAGGGCCACACTTCTGgagaaataatcaatttcatGACTGTTGATGCTGAAAGAGTTGGTGTCTTCAGTTGGTATATGCATGATTTGTGGATGGTGGCTCTGCAAGTTGTGTTGGCCTTGTTGATTTTGTATAAAAACCTTGGGCTAGCTTCAATTGCTGCTCTTGTTGCAACTATTGTTGTTATGTTGGCAAATGTTCCCTTGGGATCATTGCAAGAGAAGTTTCAAAAGAAGTTGATGGAGTCAAAAGATACAAGAATGAAGGCCACATCTGAGATTTTAAGAAACATGAGGATTCTCAAACTACAAGGATGGGAAATGAagtttctatcaaaaataaCTGAGCTCAGGAAAACTGAGCAAggttggttaaaaaaatatgtttatactGCAGCCATGACCACGTTTGTGTTTTGGGGTGCACCCACATTTGTATCGGTGGTTACTTTCGGTACTTGTATGCTTATAGGGATCCCCCTTGAATCGGGAAAGATCTTGTCTGCACTTGCAACATTCCGGATCCTTCAGGAGCCCATTTATAATCTTCCAGATACAATTTCGATGATAGCACAAACTAAAGTTTCTCTTGATAGGATTGCTTCATTCCTTTGTCTTGATGACTTGCAGTCTGATGTTGTAGAGAAGCTTCCTCAGGGCAGTTCTGATACAGCAATTGAAGTAGTTGATGGAAACTTTTCTTGGGATTTATCTTCCCCTAATCCAACATTACGAAATATAAATGTCAAAGTTTTTCATGGGATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTACTCTACTTTCTTGTGTATTGGGAGAAGTACCCAAGATATCAGGCATTCTTAAGGTTTGCGGAACAAAGGCCTATGTTGCTCAATCTCCATGGATACAAAGCGGCAAGATAGAggataatatattgtttggtaAACACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGTTCTCTGAAGAAGGATCTAGAGATTTTGTCATTTGGTGATCAGACAATTATAGGAGAACGAGGAATAAATTTGAGCGGTGGACAGAAACAAAGAATACAAATTGCGCGTGCTCTTTACCAAGATGTTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCACACAGGCTCTCACCTCTTTAAGGAGTGCTTACTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTATTGCTGACCTTATATTGGTCATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATAATGATCTGCTTAATAGTGGTACTGATTTTATGGAACTTGTTGGTGCACACAAAAAAGCTTTGTCTACACTAGATTCATTGGATGGAGTGACAGTATCTAATGAAATAAGTACCTTGGAACAAGATGTAAATGTCTCTGGCATGCAtggttttaaagaaaaagaggcGAGCAAAGATGAGCAAAATGGTAAAACAGACAACAAAAGTGAACCAAAAGGCCAGCTtgttcaagaagaagaaagagagaaaggtaGAGTGGGGTTTTCAGTTTATTGGAACTATATCACAACAGCATATGGAGGAGCTCTTGTACCATTCATATTGTTGGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCAACTCCCATCTCAACAGATGTGGAGCCACCTGTTGGAGGAACGACTCTTATAATAGTCTACGTTGGTTTGTCCATTGGAAGTGCTTTCTCCATCCTTGTCAGAGCATTGCTGCTTGTCACAGCTGGTTATAAGACAGCTACTATGCTCTTCAATAAAATGCACTTCTTCATTTTCCGTGCTCCAATGTCATTTTTTGATTCCACTCCAAGTGGGCGAGTCCTTAACAGAGCTTCAACTGACCAAAGTGCAGTGGATACAGACATTCCTTATCAAATTGGGTCATTTGCCTTCTCTATGATCCAGCTTCTGGGAATTATAGCAGTGATGTCTCAAGTTGCATGGCAGGTTTTCATTATCTTTATACCTGTGATAGCAGTCAGCATCTGGTATCAGCAATATTATATTCCATCAGCTCGAGAACTATCACGTTTAGTTGGTGTCTGCAAAGCCCCAATCATTCAACACTTTGCTGAAACAATTTCTGGTAGTTCAACCATTAGAAGCTTTGATCAGCAGTCTAGATTTCAGGAAACAAATATGAAACTAACTGATGGGTATTCTCGCCCAAAGTTCAATATTGCTGGTGCCATGGAATGGTTGTGCTTTCGCTTAGATATGTTGTCTTCTATCACATTTGCCTTTTCCTTAATATTCTTAATATCTATTCCACCGGGATTCATAGATCCAGGCATTGCTGGTTTAGCTGTTACGTATGGACTTAATTTGAACATGATACAAGCTTGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTATACTTGTATTCCTAGTGAGCCTCCCCTTATTGTAGAAGAAAATTGTCCAGATCCTTCTTGGCCCTCATATGGTGAGGTTGATATACAAGATTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGCGTGGTCTTACTTGCAAATTTCGTGGAGGACTAAAAACTGGCATTGTTGGGAGAACTGGAAGTGGTAAATCCACTCTCATACAAACACTTTTCCGAATTGTTGAGCCTACAGCTGGGCAAGTTATGATTGATAGTATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACAGTGAGAAATAATTTGGACCCCTTGGAAGAATACACTGATGAGCAAATTTGGGAGGCCCTGGATAAGTGTCAACTTGGAGATGAAgttagaaagaaagaaggaaagctTGACTCTACAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAAAGGCAGTTGGTTTGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTCGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAACATTTCTCTGACTCTACAGTCATTACCATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACACCCCAACAACTTTGCTAGAGAATAAATCATCATCTTTTGCTCAACTTGTTGCAGAGTATACCGTGAGGTCCAATTCCAGTTTTGAGAAATCTGTTGATCACTGA 4530 0.3991 MLSVFSPLSLVHPATGVLLKPVFPHGLSGFLHLLLLVAVLLSWVWKKIAAGARDESKEKRNNTFFKTTVFCSLGVSAFSFVLCLFNFFYWYTSGWSEEKLVTLLDLALKTLAWGAVCVCLHKGFFSSGERRFSFFFRVWCAFFLFVSCYCLGVDIVVISERRVALPTQYLVSDVVFTCVGLFFCYVGYFVKNEGHDYGLREKEDSGIQEPLLNGDTNVGDALGSKETKGGDTVTPFSYAGILSILTFSWVGPLIAVGNKKTLDLEDVPQLDSRDSVVGAFPTFRDKLEADCGAINSVTTLKLVKSLVMLVWREILFTAFLALLNTLASYVGPYLIDSFVQYLDGQRQYENQGYVLVSAFFFAKLVECLSQRHWFFRLQQIGLRMRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHDLWMVALQVVLALLILYKNLGLASIAALVATIVVMLANVPLGSLQEKFQKKLMESKDTRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEQGWLKKYVYTAAMTTFVFWGAPTFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLCLDDLQSDVVEKLPQGSSDTAIEVVDGNFSWDLSSPNPTLRNINVKVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNILFGKHMDRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDVDIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPIADLILVMKDGKITQCGKYNDLLNSGTDFMELVGAHKKALSTLDSLDGVTVSNEISTLEQDVNVSGMHGFKEKEASKDEQNGKTDNKSEPKGQLVQEEEREKGRVGFSVYWNYITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISTDVEPPVGGTTLIIVYVGLSIGSAFSILVRALLLVTAGYKTATMLFNKMHFFIFRAPMSFFDSTPSGRVLNRASTDQSAVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIIFIPVIAVSIWYQQYYIPSARELSRLVGVCKAPIIQHFAETISGSSTIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPPGFIDPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTCIPSEPPLIVEENCPDPSWPSYGEVDIQDLQVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPTAGQVMIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSTVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTTLLENKSSSFAQLVAEYTVRSNSSFEKSVDH 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3552 1509 MobiDBLite consensus disorder prediction 888 916 - -
Ssu6g3552 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 315 595 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g3552 1509 CDD ABCC_MRP_domain2 1257 1477 - -
Ssu6g3552 1509 Pfam ABC transporter 647 781 IPR003439 GO:0005524
Ssu6g3552 1509 CDD ABC_6TM_ABCC_D1 316 603 IPR044746 GO:0140359
Ssu6g3552 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 852 IPR003439 GO:0005524
Ssu6g3552 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 942 1222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g3552 1509 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 87 1505 - -
Ssu6g3552 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1490 IPR027417 -
Ssu6g3552 1509 Pfam ABC transporter transmembrane region 315 582 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g3552 1509 Pfam ABC transporter transmembrane region 942 1183 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu6g3552 1509 Gene3D ABC transporter type 1, transmembrane domain 902 1240 IPR036640 GO:0005524|GO:0016021
Ssu6g3552 1509 Gene3D ABC transporter type 1, transmembrane domain 295 610 IPR036640 GO:0005524|GO:0016021
Ssu6g3552 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 851 IPR027417 -
Ssu6g3552 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1493 IPR003439 GO:0005524
Ssu6g3552 1509 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 87 1505 - -
Ssu6g3552 1509 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524
Ssu6g3552 1509 Pfam ABC transporter 1277 1424 IPR003439 GO:0005524
Ssu6g3552 1509 SMART AAA_5 656 829 IPR003593 -
Ssu6g3552 1509 SMART AAA_5 1285 1478 IPR003593 -
Ssu6g3552 1509 Gene3D - 1243 1495 IPR027417 -
Ssu6g3552 1509 SUPERFAMILY ABC transporter transmembrane region 940 1241 IPR036640 GO:0005524|GO:0016021
Ssu6g3552 1509 SUPERFAMILY ABC transporter transmembrane region 306 607 IPR036640 GO:0005524|GO:0016021
Ssu6g3552 1509 CDD ABCC_MRP_domain1 629 829 - -
Ssu6g3552 1509 Gene3D - 611 864 IPR027417 -
Ssu6g3552 1509 CDD ABC_6TM_ABCC_D2 940 1234 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3552 Ssu-Chr6 79095110 79100856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3552 629 859 Calmodulin-binding Proteins AT2G36910 29.084 1.35e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3552 - K05666 gmx:100777836 2618.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3552 6 79095110 79100856 Ssu9g1050 9 41486639 41490174 PCT