Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3548 ATGGCTGCTACTGTGTCTCTCTATCCTTATAAACCCCTGCTATATTTTTCGACTCCTTCATGTTCCCGTTCTCAATTTCTGAATTTGGAGAGAGGGCATTTGGGTTGTGCAACGTGGAAGAGTTTGGTTAAACCTGCAGCACATTCCAATCCGAGGATTCTCAAGACCAACAGGAAGTCAAAGTATGGAGAGGCCCTATCGCTGTACGACAGTGACGAAGACGATGAAGAAATGGATGATGAAGATTGGCTTTCTGATGAGGAATTTGCTGAGCCTGCTGACTTTGATATTAATAACAAGAGATTTAAGTCGAAGACAAATAAAGGAAAAGATAGAGAGCAGGAATGGGAGTGGGGTTTGAGATCTTTTGACAATGAACAAAGCATTAGATTGCCCAGAAGTGAGAGAGTGGCATCCTTACAACGAAATGAGATTGGAAAGCTTAGTAGAAAtgtaaaggataaaaaatatccGCGGTTGTCTGAAGAAATTCCTTTGGATGTGAAATGGTTACCACTTCTTGATTACTTAAGCACCTTTGGAATAAAGGAATCACACTTTATCCAAATGTATGAGAGGCACACGCAATCACTTCAAATTAATGTTTGTTCTGCACAGGAAAGGTTAGAGTACTTATTGAGTGTTGGTGTTAAACATAGAGATGTAAGAAGAATCCTTTTGAGGCAGCCACAAATTCTTGAGTATACGGTGGAGAACAATTTAAAGTCTCGTGTTGATTTCTTGAGGGGCCTGGGCATACCTAATTCTAGAATAGGGCAAATCATTGCTGCTGCTCCATCCTTGTTTTCTTATAGTGTTGAGAATTCGTTAAAACCAACAGTAAGATATTTAATTGAGGAAGTTGGCATCAAGGAAAAAGATTTGGGTAAGGTCATTCAGCTTAGTCCCCAAATTCTTGTGCAAAGAATTGGTGTTTCATGGAATACTCGTTATATGTTTCTGACCAAAGAGTTGGGTGCTCCCAGAGATAGCATTGTGAAGATGGTGACAAAACATCCCCAGCTTCTCCATTACAGCATAGATGATGGATTACTTCCAAGAATAAATTTCCTAAGGAGCATAGGAATGAAAAATTCAGACATCGTGAAAGTCTTGACTAGCCTTACACAGGTGCTATCTCTGTCCTTGGAGGAGAATCTAAAGCCCAAATATCTGTACTTGGTTAATGAACTTAACAATGAGGTGCAATCTTTGACCAAATACCCAATGTATCTTAGCTTATCTCTAGACCAGAGAATTCGTCCTCGTCATAGGTTCTTGGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCACTTGGATCTCTAGTTCCAACTGATGAATGCTTTTGCCAACAGTGGGCTGGAACTAGTTTGGATAAATACTTGGCATTTCGTCAGAgattattacttaaaaagtttgctgagaaatatgaaagaaaaatgtga 1449 0.383 MAATVSLYPYKPLLYFSTPSCSRSQFLNLERGHLGCATWKSLVKPAAHSNPRILKTNRKSKYGEALSLYDSDEDDEEMDDEDWLSDEEFAEPADFDINNKRFKSKTNKGKDREQEWEWGLRSFDNEQSIRLPRSERVASLQRNEIGKLSRNVKDKKYPRLSEEIPLDVKWLPLLDYLSTFGIKESHFIQMYERHTQSLQINVCSAQERLEYLLSVGVKHRDVRRILLRQPQILEYTVENNLKSRVDFLRGLGIPNSRIGQIIAAAPSLFSYSVENSLKPTVRYLIEEVGIKEKDLGKVIQLSPQILVQRIGVSWNTRYMFLTKELGAPRDSIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDIVKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDKYLAFRQRLLLKKFAEKYERKM 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3548 482 PANTHER CGI-12 PROTEIN-RELATED 35 474 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 Pfam mTERF 175 248 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 Pfam mTERF 237 429 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 Gene3D Transcription termination factor 3, mitochondrial 233 469 IPR038538 -
Ssu6g3548 482 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 35 474 - -
Ssu6g3548 482 SMART mt_12 188 218 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 SMART mt_12 296 328 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 SMART mt_12 223 254 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 SMART mt_12 333 364 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 SMART mt_12 259 291 IPR003690 GO:0003690|GO:0006355
Ssu6g3548 482 SMART mt_12 369 401 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu6g3548 mTERF 2.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3548 K15032 - gmx:100809638 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3548 6 78835462 78837558 Ssu6g3548 6 78835462 78837558 ECH