Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3546 ATGTCTCAGAAACATAAAATGTCCTATGGCTCCAACAGGTTCAGCCTTGAGCCTGAGCAAAATCTGGGGTCATGTTGCTTCCTGCAAAATGAGAACCTAGATTACTACTCATCCTCTGATAATAGTAGCCATGCAACCTACCCTTCTGCTCATACTCTAGAACAATATTGCACCCTGGAATCTTCTACAAAGAACAGTTTCCCTTCCCTAAATCCCCCATCTACTGTCAGTTTCTCCCCTAACAATAGCCCAGTCCCAAAGCTacaatcaaaatcaaatgaGTCGAGTTCACAGAATTCTcttgaaattattaatgattCGCTAGAAAATGAATCTTGTTTGACACATAACGACAATGAGCTGAGGCACAAGATAAGAGAGCTCGAAAGTGCTATGTTGGGACATGATGCAGACATTCTGGATATATATGATATTGATACCATAATTCCAGAAGAATCTGATTCATTTTTGTTAGAGGCAGAAAGGTGGAAGAGAATGATGGAAATGATGTCCAGAGGGGATTTGAAAGAGATGCTTTGTACATGTGCAAAAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTGCGTAAAATGGTCTCCGTGTCAGGCAACCCAATCCAACGATTGGGAGCATACATGTTGGAGGCTCTTGTTGCAAGGCTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTACTGAACTCCTCTCACACATGCATCTACTTTATGAAATCTGTCCATATCTCAAATTTGGGTACATGTCAGCAAATGGAGCTATTGCTGAAGCCATGAAGGAGGAAAGTGAAGTCCACATAATTGATTTTCAGATTAACCAGGGAATCCAGTGGGTAAGCCTAATCCAAGCTCTTGCTGGCAGACCTGGAGGACCCCCCAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGGGAGGGGGTCTTGCAATCGTCGGTGAAAGATTATCAACACTTGCACAATCATGTAACGTACCCTTTGAGTTCCATGCTGTAGGAGCTGCTCCCACTGAGGTTGAACTTAAAGACCTTGAACTTCAACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATGTTCCAGATGAAAGTGTGGATAGTCAGAATCATCGTGACCGGTTGTTGAGATTGGCAAGTTGCTTGTCTCCTAAGATTGTGACACTGGTTGAGCAAGAGTCAAATACCAATAACCTCCCATTCTTCCCCCGTTTTGTGGAGACAATGAACTACTACTTGGCTGTTTTTGAGTCAATTGATGTTGCTTTGCCAAGGGAGCACAAAGAAAGGATTAATGTGGAACAGCATTGTTTGGCTCGAGAAATTGTCAACTTAATAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCATGAGCTTCTGAAGAAGTGGAGATCGCGTTTCACAATGGCTGGATTCACACCATATCCATTGAACTCCTTTGTTaattgttcaataaaaaatctTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGACGGTGCTCTATGCCTTGGTTGGATGAATCAAGTTCTTGTTACCTCTTGTGCTTGGAGGTGA 1638 0.4225 MSQKHKMSYGSNRFSLEPEQNLGSCCFLQNENLDYYSSSDNSSHATYPSAHTLEQYCTLESSTKNSFPSLNPPSTVSFSPNNSPVPKLQSKSNESSSQNSLEIINDSLENESCLTHNDNELRHKIRELESAMLGHDADILDIYDIDTIIPEESDSFLLEAERWKRMMEMMSRGDLKEMLCTCAKAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGTELLSHMHLLYEICPYLKFGYMSANGAIAEAMKEESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGFDDSTSAYARGGGLAIVGERLSTLAQSCNVPFEFHAVGAAPTEVELKDLELQPGEAIAVNFAMMLHHVPDESVDSQNHRDRLLRLASCLSPKIVTLVEQESNTNNLPFFPRFVETMNYYLAVFESIDVALPREHKERINVEQHCLAREIVNLIACEGAERVERHELLKKWRSRFTMAGFTPYPLNSFVNCSIKNLQQSYQGHYTLEERDGALCLGWMNQVLVTSCAWR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3546 545 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 15 544 - -
Ssu6g3546 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Ssu6g3546 545 Pfam GRAS domain family 176 545 IPR005202 -
Ssu6g3546 545 MobiDBLite consensus disorder prediction 64 100 - -
Ssu6g3546 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3546 Ssu-Chr6 78823869 78825506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3546 49 545 GRAS Transcription Factor Family AT1G50600 61.630 0.0 599
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g3546 GRAS 3.2e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3546 - - gmx:100779977 968.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3546 6 78823869 78825506 Ssu6g3546 6 78823869 78825506 ECH
Ssu9g1040 9 41257678 41259303 Ssu6g3546 6 78823869 78825506 PCT