Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3545 ATGCATGCCTTATGGGTCTCCTTGAAGGATACTGTCAAATGTGGAAACAAGCTCAACGACGTAATCAAGCAGCAAACAAAATGCAGCAAAGGAAGTAGCCATGTttcagaaaagaagaaaatgaatggaTATAATAGACCTCCAATTGAAACTCCAACTAGCGTAGTAGTTTCAAGACCAAGCAACACACTGGTACGGCTTCATGAGCTGAGTGTTGGAGACCCATCAAGAAAAATTGTGGAGATGATCTTTCAAAAAGCTTGGTTTAACACATCAAAGCCACTGAAGAAGGTTAGAACAGTCCTCAGGGTGAGCTACTCAGAAGAAGTCCTTGAAAGGTTTGAAAAGTATAGAGAAAATGTGAAGAAGGTGGCCTCTGAGCAATATCCAAGGCATCCAAGGAGCACAGTTGATGGGAACGAACTGTTGCGGTTCTATGGTACTACAATGAGATGTTTCCAAGGGAAATCTGCGAAGAAAGTTTATGATCTCTGTAAAGATCCATCTTGTTATCTTTgccaaataattcaatttaatttcaacacACGATGTGCCGAGATTCACTTGAATACAAGTGGCAAAGATTTGGGTAACAGAACAACTGCCACTGCCACAGTACGTAGTGTGAAAAAAGCTGCAATAATTTGCAGGATAATTGCCGGAACTGCAGCAAATGAAGTTGATGGTGAATATGAAGGGTCTCACTCTACTGGGTTAGGAGAAATGCGGTTTAGTTTagaaaaatttgtagaaaaaaatccCAGTTCTATTCTTCCttgttttgtaataattttcaGCTAA 801 0.3683 MHALWVSLKDTVKCGNKLNDVIKQQTKCSKGSSHVSEKKKMNGYNRPPIETPTSVVVSRPSNTLVRLHELSVGDPSRKIVEMIFQKAWFNTSKPLKKVRTVLRVSYSEEVLERFEKYRENVKKVASEQYPRHPRSTVDGNELLRFYGTTMRCFQGKSAKKVYDLCKDPSCYLCQIIQFNFNTRCAEIHLNTSGKDLGNRTTATATVRSVKKAAIICRIIAGTAANEVDGEYEGSHSTGLGEMRFSLEKFVEKNPSSILPCFVIIFS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3545 266 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 266 - -
Ssu6g3545 266 Gene3D - 64 266 - -
Ssu6g3545 266 SUPERFAMILY ADP-ribosylation 67 266 - -
Ssu6g3545 266 PANTHER NUCLEIC ACID-BINDING PROTEIN 2 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3545 Ssu-Chr6 78822513 78823582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3545 69 264 C2H2 Transcription Factor Family AT5G54630 36.449 1.40e-31 119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3545 6 78822513 78823582 Ssu6g3545 6 78822513 78823582 ECH