LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g3544	ATGGACGCCGCCGCCTCCTCCTCCGGCGAACCCCACCCGAGTTCGGAGCTCCGACTCACCGGGGCGTCCGAGGATCCGATTCGAACCGGGTCGGGCCAAAATTCGTCGGCGAGGTACAAGCTGATGTCGCCGGCGAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGGCTTAGTCCGACGTCGTTTCTGGAATCCCCTGTTCTTCTTTCCAACATGAAGGTGGTGCCTTCACCAACTACAGGGTCCCTTCGTAAGCTTCAACAAACGGTACATGGTTCTATGGCTTCTGCTGCCTCTGCCACGTTTCCAATGACCACTACATGCTTCAATACCGATACTGCTGATGACAGAAAATCAAGCTTCTTTGAGTTTAAACCACTCAATAGATCAAATATGGTTCCTGCAGACTTCAACAACCATGTAAGTAAACAATCTACTCAAGTAGAAGGTCCAGCAGAAGCTCAATCATTTGTTTCCTCACCTTTAGTTGAAAGTGAGATAGCAGTTCCTTCTAATGAATTACGCCTAACATCTCCTGTACAAATGGTTAGTTCTGGTGCTAGTGCTCCTTTTGATGTTGATTTGGATGACATTAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCACATGCTGAGGTTAGAGGCAGTGGACTTTCAGTTGCAGCTGAAAAAACATCTGATGATGGATACAATTGGCGAAAATATGGGCAAAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTTTTTGAACGCTCTCATGATGGTCAAATGACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGGTACTGTTATGTCTATTCAAGGAGAGAGATCTAATAAGGCAGCTTCTTTGGCTGGCCGAGATGACAGAGCATCCATTATGTATGGTCAGGTATCTCATGCTGCTGAGCCCAACAGTACTCCAGAGCCATCACCTGTAGCAACAAATGGTGATGGTTTAGAGGGTGCTGGATTTGTGTCGAACAGGACTAATGAAGAGGTTGATGATGACGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGCTGACATCACTCCTGTAGTTAAGCCTATCCGGGAACCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTACCGCTGGCGTAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAATGCACAAATGCCGGTTGCCCCGTCAGAAAACATGTGGAGAGGGCATCGCATGACCCAAAAGCAGTGATAACCACATACGAGGGTAAACACAATCATGATGTACCAGCTTCAAGGAGTAGCTGCCATGACATGGCAGTACCAGCAGCTGCAGGTGGACAGACAAGAGTTAAGTTAGAAGAAAGTGATACCATTAGCCTTGACCTTGGTATGGGCATTAGCTCAGCTGCTGAAAATAGATCAAACGCGCAAGGGAACATGCTGCACTCAGAATTTGGGTACACTCGAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTACCCCATCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCAAATCCCTATGGTTCTAGAGACAATAGGAGTGATGGTCCATCTTTAAACCATTCCTCATATCCATGCCCACAGAGCATGGGAAGAATACTAATGGGTCCATGA	1767	0.4601	MDAAASSSGEPHPSSELRLTGASEDPIRTGSGQNSSARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVVPSPTTGSLRKLQQTVHGSMASAASATFPMTTTCFNTDTADDRKSSFFEFKPLNRSNMVPADFNNHVSKQSTQVEGPAEAQSFVSSPLVESEIAVPSNELRLTSPVQMVSSGASAPFDVDLDDINHKGNTATGLQASHAEVRGSGLSVAAEKTSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQMTEIIYKGTHDHPKPQPSCRYSTGTVMSIQGERSNKAASLAGRDDRASIMYGQVSHAAEPNSTPEPSPVATNGDGLEGAGFVSNRTNEEVDDDDPFSKRRKMELGNADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPASRSSCHDMAVPAAAGGQTRVKLEESDTISLDLGMGISSAAENRSNAQGNMLHSEFGYTRTHTSNSNFKFVHTTPSPVYFGVLNNSSNPYGSRDNRSDGPSLNHSSYPCPQSMGRILMGP	588

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g3544	588	PANTHER	TRANSCRIPTION FACTOR WRKY FAMILY-RELATED	30	568	-	-
	Ssu6g3544	588	SUPERFAMILY	WRKY DNA-binding domain	229	291	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	Pfam	WRKY DNA -binding domain	233	289	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	Pfam	WRKY DNA -binding domain	409	465	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	MobiDBLite	consensus disorder prediction	1	38	-	-
	Ssu6g3544	588	ProSiteProfiles	WRKY domain profile.	403	468	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	MobiDBLite	consensus disorder prediction	332	374	-	-
	Ssu6g3544	588	MobiDBLite	consensus disorder prediction	557	588	-	-
	Ssu6g3544	588	MobiDBLite	consensus disorder prediction	557	578	-	-
	Ssu6g3544	588	SMART	WRKY_cls	232	290	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	SMART	WRKY_cls	408	467	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	30	568	IPR044810	GO:0003700
	Ssu6g3544	588	Gene3D	WRKY domain	224	292	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	Gene3D	WRKY domain	393	469	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	ProSiteProfiles	WRKY domain profile.	227	291	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Ssu6g3544	588	SUPERFAMILY	WRKY DNA-binding domain	400	468	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g3544	Ssu-Chr6	78813835	78819382	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g3544	42	588	WRKY Transcription Factor Family	AT4G26640	55.957	0.0	533

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Ssu6g3544		WRKY	1.5e-25	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g3544	-		-	gmx:100816583	1080.86

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g3544	6	78813835	78819382	Ssu6g3544	6	78813835	78819382	ECH
	Ssu9g1039	9	41248834	41254497	Ssu6g3544	6	78813835	78819382	PCT