Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3542 ATGAATCACGAAGGTACCATTtaccaaagaaagaaaagaaaagtgaatTATCACTTTCcaataatgattaataatGTTCTTTTGGCTTGCATCAAGAGACATCCCATCCACCTTTTCCGCCGCCAACAACAGTGCCATCTGGATTACCCACGAGAAAGGGAACCAGGTACATACATCTATGCAAGAAGGATTTCAGGAGCAGAGTTATTCCTTTGGGTTTTTACCCCTCCACTTCCGTTAGAACTACATTTTCGAGGACAAAATATTTGGGCAACCGCAATGGAATATTTGATGTCAAAGGGAATGGGTTTTGCCAATCAGGCACATCTTTCGGGATGCTCCATTGGTGGCCTAGCTCCTATTTTTACAATGCGGTGA 378 0.3942 MNHEGTIYQRKKRKVNYHFPIMINNVLLACIKRHPIHLFRRQQQCHLDYPREREPGTYIYARRISGAELFLWVFTPPLPLELHFRGQNIWATAMEYLMSKGMGFANQAHLSGCSIGGLAPIFTMR 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3542 125 Pfam Pectinacetylesterase 81 122 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3542 Ssu-Chr6 78797001 78798047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3542 81 122 Carbohydrate Esterase AT2G46930 64.286 6.63e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3542 - - twl:119981784 61.6178