Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3541 ATGATGCCGAGTGTTAACCCTGACCCATCTGACAAAGATTCTGAGCCATTTGTTGAGACCGACCCAACTGGGCGCTATGGTAGATACAGTGAGTTACTTGGGTGTGGAGCTGTGAAAAAGGTGTACCGTGCATTTGATCAGGAAGAAGGAATAGAGGTGGCTTGGAACCAGGTGAAGCTGAGGAACTTCTGTGATGACCCTGCCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTGCTCAGAAGCTTGACCAACAAAAACATCATTGCCCTTTACAGTGTGTGGAGGGATGAGCAGCGTAACACTTTGAATTTCATCACTGAGGTCTGCACCAGTGGGAATTTGAGGGAGTACCGGAAGAAGCACAGGCATGTTTCCATGAAGGCCCTAAAGAAGTGGTCTAAGCAGATTTTGAAGGGGTTGAATTATTTGCACTTGCATGATCCCTGCATTATCCACAGAGATCTCAATTGCAGCAATGTGTTTGTCAATGGGAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTAGCAGCAATTGTGGGCAAGAACCATTGTGCTCACTCGATTCTTGGCACACCAGAATTTATGGCTCCAGAATTATACGATGAAGACTACACAGAATTGGTGGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTGACAATGGAGATTCCTTACAGTGAATGTGACAATGTTGCTAAGATATACAAGAAGGTGTCTTCTGGAGTTAGACCTGCGGCCTTGAACAAGGTCAAAGATCCAGAGGTGAAGGCCTTCATTGAGAAGTGCCTTGCTCAGCCAAGGGCTAGACCTTCTGCAGCTGAGCTTCTCAGAGATCCTTTCTTTTATGAGATTGTTGATGATGACGAAAATGATGACTGTTCTTGTTCATACTAA 906 0.4503 MMPSVNPDPSDKDSEPFVETDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDPAMVDRLYSEVRLLRSLTNKNIIALYSVWRDEQRNTLNFITEVCTSGNLREYRKKHRHVSMKALKKWSKQILKGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHCAHSILGTPEFMAPELYDEDYTELVDIYSFGMCVLEMVTMEIPYSECDNVAKIYKKVSSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSAAELLRDPFFYEIVDDDENDDCSCSY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3541 301 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 301 - -
Ssu6g3541 301 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3541 301 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Ssu6g3541 301 CDD STKc_WNK 25 285 - -
Ssu6g3541 301 MobiDBLite consensus disorder prediction 1 23 - -
Ssu6g3541 301 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3541 301 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 301 - -
Ssu6g3541 301 SUPERFAMILY Protein kinase-like (PK-like) 19 291 IPR011009 -
Ssu6g3541 301 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3541 Ssu-Chr6 78781439 78783789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3541 6 285 MAP Kinase Kinase Kinase AT5G55560 84.286 0.0 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Ssu6g3541 Pkinase 3.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3541 K08867 - gmx:100786910 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3541 6 78781439 78783789 Ssu6g3541 6 78781439 78783789 ECH
Ssu9g1038 9 41206565 41208216 Ssu6g3541 6 78781439 78783789 PCT