Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3540 ATGCAGgacacaaaacatttttctgtGTTTCAAAGGAGGCTGGTTTTCCTTGCTgtccttcttttctttatcaTAGAATGTACAAGAGGCGAGTTATCAGAATCTGAGTCATTCTTCAATTTCCTAAGGGCTGTTGATCCCAAAAACGTGCTTAACACTACCTGGATCGGGTCACCCTCGCATCCGTGCTTGGTCAAGTTGAATGGTGTAAGATGTAACTCAAATGCTACCAATATTGTACATATAAGGCTTGAGAACTTGAACCTTAGTGGCACAATCGATGCAGATTCCCTATGTAGGCTCCAAGAGTTAAGAGTGGTGAGCTTGGCTAAGAACAACATTAGAGGAACCATCCCACACTCAATTTTGCATTGTTCAAGGTTGACACATTTAAATGTAACCAGCAACCAATTGAGTGGGAGGTTGCCAAATGCCTTAACAAAATTGAGACATCTTAGGAACTTGGACATCTCTAATAACAACTTTTCTGGTATGATCCCAAGTAAACAACAATATAGGCGCCTCTTTACTTATTATGCGACTCCAAGTAATAAGTTGGAAAGCAACAACAGTTCCAAAGAGTGGCTAATTGAGGAAACAACACAGCAACCAGTGCCAGGTCCTAACACATCTGATGATGAAAAGAAACCATGGTATTTGAAGAATGAAATCATTGTGGCGTTAATTTTGGGCTGTGGATTGCTTTTTTCATCCCTTTACTTTATGGTAAAGAAGTCAGGAAAGGTAAGTGAAGAGAAAAAGGTGGTTAAAGACCCTCATCGTGTGTCTCCAATAAAAAAGGCTACATCTCATGAAGTTCAAGAGGTGAAGCTAAAGGAAGGAGATTCTgaacttgttttctttgttgAAGATCGTGAAAGGTTCACACTAGAGGACCTTCTTCGAGCCACTGCTGACTTGAGAAGTGAAGGCTTTTGCAGCAGCCTTTACAAGGTGAAATTGGAGAACAATGTTCACTATGCAGTCAAAAGATTGAAGAATTTGCAGGTATCCTTGGAAGAATTTGGTGAAACGTTAAGGAAGATAAGTAACTTGAGGCATCAAAATATCCTCCCCCTTGTTGGTTACCGTTCCACCAGTGAAGAAAAACTCATCATTTACAAATATCAAAGCAATGGAAGCCTGCTAAATCTGTTAAACGATTATATAGCAGGTAGAAAAGGTTTCCCATGGAAACTGCGTCTGAATATAGCATGTGGGATTGCAAGGGGTTTGGCCTTCATGTACCGGAAGTTGGATGAAGAGGAGGTCATTCCCCATGGAAATCTTAAGCCATCAAACATCCTTCTTGATGAGAACAATGAGCCACTAATAAGTGAGCATGGTTTATCAAAATTCATGGACCCAAATAGAGGTTTCCTGTTTTCTTCTCAGGGATACACAGCTCCTGAAAAGAGCCTAACAGAAAAAGGTGATGTGTACAGCTTTGGAGTGATTCTTCTTGAACTGCTAACAGGAAAAAGCATAGAGGTGAGCAGAATAGACCTTGCTAGGTGGGTGAGGTCCATGGTGAGGGAGGAATGGACAGGAGAGGTCTTTGACAAAGAGGTCAGGGAAAATGAGCATCAGTGGGCATTTCCTCTGCTGAACATAGCCCTCTCGTCTGTGTCACGTTTCCAAGAAAATAGGCCAACCACTGGGGAGATTTTGGAGAAGATAGAGCAGGTGATGGATGAACATGAACAACATCAGGAACGTTTTGCTTCCAAATGCTGCTCTAATGGATCCAACCGTGATGAATGTTGTTCACTTCACAAAATCATACCTGAAACATGGGATTCTCCAGTATCTAATTGTTGA 1821 0.4036 MQDTKHFSVFQRRLVFLAVLLFFIIECTRGELSESESFFNFLRAVDPKNVLNTTWIGSPSHPCLVKLNGVRCNSNATNIVHIRLENLNLSGTIDADSLCRLQELRVVSLAKNNIRGTIPHSILHCSRLTHLNVTSNQLSGRLPNALTKLRHLRNLDISNNNFSGMIPSKQQYRRLFTYYATPSNKLESNNSSKEWLIEETTQQPVPGPNTSDDEKKPWYLKNEIIVALILGCGLLFSSLYFMVKKSGKVSEEKKVVKDPHRVSPIKKATSHEVQEVKLKEGDSELVFFVEDRERFTLEDLLRATADLRSEGFCSSLYKVKLENNVHYAVKRLKNLQVSLEEFGETLRKISNLRHQNILPLVGYRSTSEEKLIIYKYQSNGSLLNLLNDYIAGRKGFPWKLRLNIACGIARGLAFMYRKLDEEEVIPHGNLKPSNILLDENNEPLISEHGLSKFMDPNRGFLFSSQGYTAPEKSLTEKGDVYSFGVILLELLTGKSIEVSRIDLARWVRSMVREEWTGEVFDKEVRENEHQWAFPLLNIALSSVSRFQENRPTTGEILEKIEQVMDEHEQHQERFASKCCSNGSNRDECCSLHKIIPETWDSPVSNC 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3540 606 ProSiteProfiles Protein kinase domain profile. 302 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3540 606 Coils Coil 557 577 - -
Ssu6g3540 606 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Ssu6g3540 606 Gene3D Phosphorylase Kinase; domain 1 265 376 - -
Ssu6g3540 606 SUPERFAMILY Protein kinase-like (PK-like) 296 560 IPR011009 -
Ssu6g3540 606 Pfam Protein kinase domain 311 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g3540 606 PANTHER TYROSINE KINASE FAMILY PROTEIN 16 598 - -
Ssu6g3540 606 Gene3D Ribonuclease Inhibitor 33 198 IPR032675 -
Ssu6g3540 606 SUPERFAMILY L domain-like 41 168 - -
Ssu6g3540 606 PANTHER OS05G0588300 PROTEIN 16 598 - -
Ssu6g3540 606 Gene3D Transferase(Phosphotransferase) domain 1 378 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3540 Ssu-Chr6 78769700 78772119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3540 13 566 Receptor kinase-like Gene Family AT5G53320 31.749 1.52e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu6g3540 Pkinase 6.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3540 - - gmx:100807491 984.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3540 6 78769700 78772119 Ssu6g3540 6 78769700 78772119 ECH