Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3539 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGAGGAATTTCCTGGGACACTGATGAGGAACGTCTCAAGGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGCACGACAGGTCGTGCTCGCGGTTTCGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAGAACACTGTAAACAGACAGTCTGGTGGCATCCATGGATCTCCGGGTCCTGGACGCACGAAAAAGATTTTCGTTGGAGGTTTACCATCAACAATCAcagaaagtgattttaagaagtaCTTTGATCAGTTTGGTACAATCACTGATGTTGTAGTAATGTATGATCACAATACCCAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTTGGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAGTGGAAAGATGGTCGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCTACCCGGAGCCCATTGATAGGATATAACTACGGTTTGAATAGAACCAGTAGCTTCCTAAATAGTTTTGCTCAGGGTTTCAATATGAATCCAATGGGAAGTTATGGAGTCAGGATGGATGGTAGGTTTAGTCCACTTACTAGTGGTAGAAGTGGCTTTACCCCATTTAGCTCCAGCGGTTATGGAATGGGACTGAATTTGGATTCAGGATTGAATCCGAGTTTTGGAGGAGCTTCCAGTTATGGTGGCAGTCTAGGATATGGTCGGATAAGTCCTTTCTACAATGGCAACTCCAGCAGATATACCACTCCTATTGGCATTAGCGGGGGCAATGGGAGAAGCGATTCTCTTATGAACTCAGCTTCTCGGAGTGTTTGGGGAAATGGCAGCCTGAATAATGCTGCCAATAATCCAGTCAGCCCTGGCGCTTACTTGGGATCTGGAAGTGGTGCTTTTGGTGTTTCAATTGGAAATAATGGCACAAATTGGGGTCCATCAGTTCCAACGCAGGGTGGAGGGGCTGCTTCTGGGTATAGTACCTGGGGTAACACTTATGAAGGTGGAGATAACAGCATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGTAGCCCAAGTCTGCCTCAATCCTCAACATTTACTGCACCAGCTGGTGGTTATGAAGGATCCTATGGGGACTTGTACCGCAGTGGTTCAGTTTACAGTGACTCAACTTGGCGATCTGCTGCTTCTGAGATAGATGCTTCTGGTTCGTTTGGTTATGGACTTGGTGGTATAGCTTCAGATGATCCAGTAAAGAGTTCTGAGGGTTTTATTGGAAACTACAATGTAACAAGTAGACAACCAAATAGAGGAATTGCTGCTTAG 1434 0.447 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQNTVNRQSGGIHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDLEEAVDRVLYKTFHELSGKMVEVKRAVPKELSPGPTRSPLIGYNYGLNRTSSFLNSFAQGFNMNPMGSYGVRMDGRFSPLTSGRSGFTPFSSSGYGMGLNLDSGLNPSFGGASSYGGSLGYGRISPFYNGNSSRYTTPIGISGGNGRSDSLMNSASRSVWGNGSLNNAANNPVSPGAYLGSGSGAFGVSIGNNGTNWGPSVPTQGGGAASGYSTWGNTYEGGDNSIGLGGGGYGRNSSPSLPQSSTFTAPAGGYEGSYGDLYRSGSVYSDSTWRSAASEIDASGSFGYGLGGIASDDPVKSSEGFIGNYNVTSRQPNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3539 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Ssu6g3539 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Ssu6g3539 477 Gene3D - 6 88 IPR012677 -
Ssu6g3539 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Ssu6g3539 477 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Ssu6g3539 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Ssu6g3539 477 Gene3D - 105 185 IPR012677 -
Ssu6g3539 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Ssu6g3539 477 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 477 - -
Ssu6g3539 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Ssu6g3539 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Ssu6g3539 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Ssu6g3539 477 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Ssu6g3539 477 SUPERFAMILY RNA-binding domain, RBD 105 216 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3539 Ssu-Chr6 78762070 78764750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3539 2 169 Eukaryotic Initiation Factors Gene Family AT2G36660 29.213 1.77e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3539 K14411 - gmx:100788515 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1037 9 41162213 41163974 Ssu6g3539 6 78762070 78764750 PCT