Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3535 ATGCCGGACCAAGATATTCGCAGTTACCTTAATGAACCTCGTCTTGTGGCCAGAAAGTTCTTGGCCAGACCTCAACATGAGGGTGTTGGGGCCGTTGTTAGAAGAAGCATAGGCCGATTTGAGCTCAAGTACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTCACTGCTCCAGCTGGGTTTCCTGATCATCCACATAGAGGCTTTGAGACGGTCACATACATGTTGCAGGGAGCTATGACGCATGAAGATTTTGAAGGGCATAAGGGAACAATTGAAGCCGGTGACTTGCAGTGGATGACTGCGGGGAGAGGGATAGTTCACTCAGAAATGCCTGCAGCTCAAGGAACCCAAAAGGGTCTCCAGCTCTGGATCAACCTCGcttcaaaacataaaatGATTGAACCAAGGTACCAAGAAATGTTGAGCAAGGACATAGCAGAAACTATGATAGATGGTATCAAAGTTAGAGTTATAGCTGGGGAAGCTCTTGGGATAAAGTCTCCAATCTACACAAGGACACCAACCATGTACTTGGACTTTTCTCTTAAACCTGGAGCTCACTTGCAACAACTTATACCAAAATCTTGGAATGCTTTTGTGTACATATTGGAAGGAGAGGGTGTCTTTGGAAACCAAAAATGTCAACCTGTAACCTCTCACCATATACTTCTTCTTGGTTCTGGGGATGGCCTAGAGGCATGGAACAAATCTTCTAAGCTCCTCAGGTTCATTTTGGTTGGAGGTGAACCATTGGGTGAACCTGTGGTGCAATTTGGACCTTTTGTGATGAATACTCAGGAGGAGATTGACCAGACAATTGATGATTTTGAGAACTATACCAACGGATTTGAGAAAGCAAGACATTGGAGGTCTGAAAGTGCAGTTGGtcttgatttttga 906 0.4371 MPDQDIRSYLNEPRLVARKFLARPQHEGVGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLQGAMTHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLASKHKMIEPRYQEMLSKDIAETMIDGIKVRVIAGEALGIKSPIYTRTPTMYLDFSLKPGAHLQQLIPKSWNAFVYILEGEGVFGNQKCQPVTSHHILLLGSGDGLEAWNKSSKLLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYTNGFEKARHWRSESAVGLDF 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3535 301 CDD cupin_pirin_N 31 128 - -
Ssu6g3535 301 PANTHER PIRIN-RELATED 7 298 IPR012093 -
Ssu6g3535 301 Pfam Pirin 33 126 IPR003829 -
Ssu6g3535 301 SUPERFAMILY RmlC-like cupins 14 293 IPR011051 -
Ssu6g3535 301 PIRSF Pirin 12 292 IPR012093 -
Ssu6g3535 301 Pfam Pirin C-terminal cupin domain 179 283 IPR008778 -
Ssu6g3535 301 CDD cupin_pirin_C 176 252 - -
Ssu6g3535 301 Gene3D Jelly Rolls 148 253 IPR014710 -
Ssu6g3535 301 PANTHER - 7 298 - -
Ssu6g3535 301 Gene3D Jelly Rolls 27 279 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3535 Ssu-Chr6 78699303 78702154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3535 13 289 Calmodulin-binding Proteins AT3G59220 58.781 2.54e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3535 K06911 - gmx:100811930 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g3535 6 78699303 78702154 Ssu6g3535 6 78699303 78702154 ECH
Ssu9g1023 9 40946484 40949547 Ssu6g3535 6 78699303 78702154 PCT