Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g3531 ATGGTATATGAAGCCAATGCAAGGGTGAGAGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTGCAGCAACAAGTTGATGGGTTACAAACCCAGTTGGCACTTGCACAAGCAGAGGTTGTGCACATAAGAATGCGCCAAGTGTTAACTTCATCTGATCAACACAAACCAGTGCGTGCAGCCTCCAATTCATCCTCAGAGAACTTATCCCCATCAAGTAGGCTCGCCAAGTCTCTTTTCGCTATGGATATGGTCGTTGATCAGCCAAACATAGGGGAGTCCTTGTGGTCATGTTAG 300 0.4767 MVYEANARVRDPVYGCVGAISSLQQQVDGLQTQLALAQAEVVHIRMRQVLTSSDQHKPVRAASNSSSENLSPSSRLAKSLFAMDMVVDQPNIGESLWSC 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g3531 99 ProSiteProfiles LOB domain profile. 1 41 IPR004883 -
Ssu6g3531 99 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 96 - -
Ssu6g3531 99 Coils Coil 20 40 - -
Ssu6g3531 99 Pfam Lateral organ boundaries (LOB) domain 1 38 IPR004883 -
Ssu6g3531 99 MobiDBLite consensus disorder prediction 53 72 - -
Ssu6g3531 99 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g3531 Ssu-Chr6 78590908 78591207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g3531 1 99 AS2 family AT1G31320 57.282 5.31e-23 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu6g3531 LOB 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g3531 - - ccaj:109811748 159.073